Bioconductor SpliceR

Showing : SpliceR • reset

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2.0k

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splicer

updated 8.0 years ago by k.vitting.seerup ▴ 120 • written 8.0 years ago by aditi ▴ 20

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2.2k

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splicer cummerbund

updated 8.5 years ago by lmanchon • 0 • written 9.5 years ago by weisbeal ▴ 10

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2.6k

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SpliceR Cuffdiff

updated 10.3 years ago by deppt002 • 0 • written 10.5 years ago by mfahim • 0

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2.1k

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rtracklayer Granges spliceR

updated 10.4 years ago by Michael Lawrence ★ 11k • written 10.4 years ago by mfahim • 0

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1.3k

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splicer rnaseq

updated 10.6 years ago by k.vitting.seerup ▴ 120 • written 11.2 years ago by hliang ▴ 20

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1.8k

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Annotation spliceR Annotation spliceR

updated 10.6 years ago by k.vitting.seerup ▴ 120 • written 11.3 years ago by hliang ▴ 20

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1.5k

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spliceR

updated 10.6 years ago by k.vitting.seerup ▴ 120 • written 10.7 years ago by knight2ni • 0

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2.3k

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bitseq spliceR

10.6 years ago elle ▴ 10

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1.8k

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dexseq bitseq spliceR

10.7 years ago elle ▴ 10

9 results • Page 1 of 1

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Answer: NUPOP usage by shepherl 4.2k

You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…

Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0

In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k

The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…

Votes

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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