Showing : SpliceR • reset
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Extract sequences corresponding to TCONS IDs from spliceR
splicer
updated 6.9 years ago by ▴ 120 • written 6.9 years ago by ▴ 20
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3
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spliceR error with GTF cummeRbund input
splicer cummerbund
updated 7.4 years ago by • 0 • written 8.4 years ago by ▴ 10
2
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4
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2.2k
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Error in SpliceR and GTF file issue
SpliceR Cuffdiff
updated 9.2 years ago by • 0 • written 9.4 years ago by • 0
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4
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1.8k
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browserSession for Arabidopsis
rtracklayer Granges spliceR
updated 9.3 years ago by ★ 11k • written 9.3 years ago by • 0
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1
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1.1k
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missing values (NA) in spliceR results
splicer rnaseq
updated 9.5 years ago by ▴ 120 • written 10.1 years ago by ▴ 20
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1
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1.6k
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Running cufflinks for spliceR
Annotation spliceR Annotation spliceR
updated 9.5 years ago by ▴ 120 • written 10.2 years ago by ▴ 20
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1.3k
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results from spliceR
spliceR
updated 9.5 years ago by ▴ 120 • written 9.7 years ago by • 0
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5
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1.9k
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using BitSeq data as input for spliceR
bitseq spliceR
9.6 years ago • updated 9.5 years ago elle ▴ 10
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Differential expression workflow for alternative splicing
dexseq bitseq spliceR
9.6 years ago elle ▴ 10
9 results • Page 1 of 1
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Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by Robert Castelo ★ 3.4k
Hi, this is a long comment thread on 4-year old post, please open a new post with you question. To increase the odds of getting useful answ…
Answer: DESeq2 rerun returns different results by ATpoint ★ 4.5k
DESeq2 is deterministic if you use same input, code and software versions. Make sure to version-control your environment by at least tracki…
Answer: [How to construct a model.matrix ] by Gordon Smyth 51k
> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by rania.alanany • 0
Hi Robert, Thank you for the explanation, But I am still little bit confused, Is the annotation package (TxDb.Hsapiens.UCSC.hg38.knownGene)…
Comment: Merge Replicates vs Mixed Model by abadgerw • 0
@gabrielhoffman any insight?
Votes
A: Some questions for remove batch effect by using mnnCorrect
A: Recommendations for combining multiple 10x runs into one SingleCellExperiment
Answer: [How to construct a model.matrix ]
Answer: Handling biological replicates in DESeq2
Comment: biomaRt rnorvegicus_gene_ensembl not available anymore
Awards • All
Popular Question to Robert Castelo ★ 3.4k
Popular Question to Michael Stadler ▴ 350
Scholar to ATpoint ★ 4.5k
Commentator to James W. MacDonald 67k
Popular Question to Stefano Mangiola ▴ 20
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