Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
Swish
•
reset
2
votes
2
replies
2.0k
views
Volcano plots of DEGs from Swish are weird
DESeq2
fishpond
salmon
swish
2.6 years ago
Qin
▴ 10
1
vote
3
replies
1.7k
views
miRNA differential expression analysis - treat as transcript level?
tximport
DESeq2
edgeR
swish
miRNA
updated 22 months ago by
Michael Love
41k • written 22 months ago by
BG
• 0
5
votes
9
replies
1.6k
views
Questions regarding failing tximeta import for swish
swish
fishpond
GenomicFeatures
tximeta
updated 21 months ago by
Michael Love
41k • written 2.1 years ago by
jvandinter
• 0
0
votes
6
replies
1.4k
views
Running swish on a non-reference transcript assembly / tximeta import issue
tximeta
swish
fishpond
updated 3.0 years ago by
Michael Love
41k • written 3.0 years ago by
Jack Riley
• 0
1
vote
3
replies
1.4k
views
Two Genotypes Four Treatments RNA-seq Analysis
salmon
rna-seq
swish
bootstrap
fishpond
updated 2.2 years ago by
Michael Love
41k • written 2.2 years ago by
samuelcjx
• 0
0
votes
8
replies
1.4k
views
swish in a blocking design?
fishpond
swish
2.2 years ago
msll0802
• 0
0
votes
8
replies
1.3k
views
Swish log2FC NA output
swish
fishpond
DifferentialExpression
21 months ago
jvandinter
• 0
3
votes
6
replies
1.3k
views
Swish with covariate for batch effect
swish
fishpond
3.6 years ago
thomas.dugedebernonville
• 0
3
votes
5
replies
1.3k
views
Swish (fishpond) scaled counts result
Swish
fishpond
3.2 years ago
675743
▴ 20
4
votes
7
replies
1.0k
views
Fishpond/Swish Interaction Test Error
fishpond
swish
10 months ago
Miguel
▴ 20
1
vote
1
reply
1.0k
views
Swish with more than two conditions. Add support for contrasts?
tximeta
DESeq2
swish
fishpond
updated 2.3 years ago by
Michael Love
41k • written 2.3 years ago by
jeremymsimon
▴ 20
3
votes
2
replies
871
views
the result of swish function from fishpond package
fishpond
swish
updated 3.9 years ago by
Michael Love
41k • written 3.9 years ago by
1911449
• 0
0
votes
3
replies
682
views
Fishpond with unbalanced dataset
rna-seq
salmon
fishpond
swish
updated 10 months ago by
Michael Love
41k • written 10 months ago by
samuelcjx
• 0
0
votes
3
replies
303
views
Interaction tests and paired interaction tests in swish
swish
salmon
fishpond
updated 3 months ago by
Michael Love
41k • written 3 months ago by
Nicholas
• 0
14 results • Page
1 of 1
Recent ...
Replies
Comment: Timecourse RNASeq analysis
by
Aurora
• 0
I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…
Comment: Once again a "Model matrix not full rank"
by
arfranco
▴ 130
But.. How to run a temporal assay?
Comment: Deseq2 and Normalization of RNA sequencing data
by
kcarey
• 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP
by
Gordon Smyth
50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma
by
Gordon Smyth
50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
Awards
• All
Popular Question
to
gene_bioconductor
▴ 10
Popular Question
to
rohitsatyam102
▴ 20
Popular Question
to
shepherl
3.9k
Popular Question
to
siajunren
• 0
Scholar
to
Rory Stark
★ 5.2k
Locations
• All
United Kingdom,
2 minutes ago
Italy,
8 minutes ago
France,
13 minutes ago
Sweden,
16 minutes ago
United Kingdom,
31 minutes ago
Traffic: 664 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6