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TCGA CNV
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0
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8.7k
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how to analyze TCGA CNV data
TCGA CNV
correlation between mRNA exprssion and CNV
updated 8.8 years ago by
spulido99
• 0 • written 9.7 years ago by
ycding
▴ 10
0
votes
4
replies
2.1k
views
Using cn.MOPs to estimate CNVs in tumors without reference normal
cn.mops
cnvtools
tcga cnv
updated 9.1 years ago by
Günter Klambauer
▴ 540 • written 9.1 years ago by
vakul.mohanty
▴ 20
27
votes
21
replies
24k
views
Mapping genome regions to gene symbols
tcga cnv
gene symbol
coordinate
updated 2.1 years ago by
James W. MacDonald
67k • written 9.6 years ago by
NS
▴ 60
3 results • Page
1 of 1
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Comment: Advice needed: Using limma for differential pathway analysis with continuous dis
by
Tadeoye
▴ 20
Thank you so much for the clarification!
Comment: Rsubread - Error on buildindex - big ref sequence
by
bryan.penning
• 0
That is most unfortunate. I truly believe subread would be a superior aligner for complex plant genomes, especially in terms of accuracy. T…
Answer: Matching patterns in an AAStringset
by
Aidan
▴ 60
This question is tagged `Biostrings`, but `str_detect` isn't part of the `Biostrings` package. If you're trying to use the tidyverse `str_d…
Comment: Can we get beta values with DMRcate package
by
James W. MacDonald
67k
If `getCollapsedBetas` isn't exported, you need to update. It's been exported since DMRcate_3.1.9 and the release version is 3.2.0 You sai…
Comment: DESeq2: Gene is DEG in one experiment but not in the other depite similar baseMe
by
ATpoint
★ 4.6k
Unknown reason means that from the results you show one cannot easily infer why exactly the IF removed this gene in one but not in the othe…
Votes
Comment: What type of counts data to import for performing Isoform analysis in edgeR
A: Relations used in GO.db GOBPANCESTOR
Relations used in GO.db GOBPANCESTOR
Answer: RSubread output significantly different from bash Subread output
Answer: RSubread output significantly different from bash Subread output
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