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TCGA CNV
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how to analyze TCGA CNV data
TCGA CNV
correlation between mRNA exprssion and CNV
updated 8.8 years ago by
spulido99
• 0 • written 9.7 years ago by
ycding
▴ 10
0
votes
4
replies
2.1k
views
Using cn.MOPs to estimate CNVs in tumors without reference normal
cn.mops
cnvtools
tcga cnv
updated 9.1 years ago by
Günter Klambauer
▴ 540 • written 9.1 years ago by
vakul.mohanty
▴ 20
27
votes
21
replies
24k
views
Mapping genome regions to gene symbols
tcga cnv
gene symbol
coordinate
updated 2.1 years ago by
James W. MacDonald
67k • written 9.6 years ago by
NS
▴ 60
3 results • Page
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Comment: biomaRt rnorvegicus_gene_ensembl not available anymore
by
alexandra.casey
• 0
any update? It's still not working for me. I'm amazed it's taking this long to fix!
Comment: git push errors
by
Jiping Wang
▴ 90
I have bioconductor remote named "upstream". thanks for help!! I missed ":devel" after master. ``` (base) jon@Jipings-2021-macbook-pro Rib…
Answer: git push errors
by
James W. MacDonald
67k
This is a question for the bioc-devel listserv (bioc-devel@r-project.org) rather than the support site. However, it looks like you are s…
Comment: How to annotate a limma Elist raw class object with an annotation file
by
James W. MacDonald
67k
Oh right. My bad. Good for you though, figuring out that it's ENTREZID, not ENTREZGENE. You did a good job of reading the error message in …
Comment: Differential Expression Genes as Independent Variables
by
James W. MacDonald
67k
Both true, so a poor suggestion on my part. I am also unclear as to how one would use a single observation (the gene expression measures)…
Votes
QSEA- Extraction of Normalized methylation across the samples
Comment: scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data
A: DESeq2 One-way ANOVA with 3 sample groups?
conumee with Infinium MethylationEPIC v2.0
A: How to bin a GRanges to small bins
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