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TCGA CNV
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0
votes
5
replies
8.7k
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how to analyze TCGA CNV data
TCGA CNV
correlation between mRNA exprssion and CNV
updated 8.8 years ago by
spulido99
• 0 • written 9.7 years ago by
ycding
▴ 10
0
votes
4
replies
2.1k
views
Using cn.MOPs to estimate CNVs in tumors without reference normal
cn.mops
cnvtools
tcga cnv
updated 9.1 years ago by
Günter Klambauer
▴ 540 • written 9.1 years ago by
vakul.mohanty
▴ 20
27
votes
21
replies
24k
views
Mapping genome regions to gene symbols
tcga cnv
gene symbol
coordinate
updated 2.1 years ago by
James W. MacDonald
67k • written 9.6 years ago by
NS
▴ 60
3 results • Page
1 of 1
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Comment: DESeq2: Gene is DEG in one experiment but not in the other depite similar baseMe
by
ATpoint
★ 4.6k
I think you run into the common pitfall that you treat results as categorical (significant, not significant) whereas in reality the results…
Comment: DESeq2: Gene is DEG in one experiment but not in the other depite similar baseMe
by
swbarnes2
★ 1.4k
It would probably help if you broke out the raw and normalized read counts for all the samples.
Comment: RSubread output significantly different from bash Subread output
by
Aimee
• 0
Hi Gordon, Thank you so much for this response. I went back and checked, and you are absolutely correct that it was shown in the settings b…
Answer: Can we get beta values with DMRcate package
by
James W. MacDonald
67k
If you get an error that says ``` Error in getCollapsedBetas(myAnnotation) : could not find function "getCollapsedBetas" ``` It …
Comment: What type of counts data to import for performing Isoform analysis in edgeR
by
ATpoint
★ 4.6k
I think this already happened, see https://github.com/nf-core/rnasplice/issues/162
Votes
Answer: RSubread output significantly different from bash Subread output
Answer: RSubread output significantly different from bash Subread output
Answer: RSubread output significantly different from bash Subread output
Comment: What type of counts data to import for performing Isoform analysis in edgeR
Answer: Running multiple KNN queries in parallel
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