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TCGA CNV
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how to analyze TCGA CNV data
TCGA CNV
correlation between mRNA exprssion and CNV
updated 8.8 years ago by
spulido99
• 0 • written 9.7 years ago by
ycding
▴ 10
0
votes
4
replies
2.1k
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Using cn.MOPs to estimate CNVs in tumors without reference normal
cn.mops
cnvtools
tcga cnv
updated 9.1 years ago by
Günter Klambauer
▴ 540 • written 9.1 years ago by
vakul.mohanty
▴ 20
27
votes
21
replies
24k
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Mapping genome regions to gene symbols
tcga cnv
gene symbol
coordinate
updated 2.1 years ago by
James W. MacDonald
67k • written 9.6 years ago by
NS
▴ 60
3 results • Page
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Comment: Can we get beta values with DMRcate package
by
James W. MacDonald
67k
If `getCollapsedBetas` isn't exported, you need to update. It's been exported since DMRcate_3.1.9 and the release version is 3.2.0 You sai…
Comment: DESeq2: Gene is DEG in one experiment but not in the other depite similar baseMe
by
ATpoint
★ 4.6k
Unknown reason means that from the results you show one cannot easily infer why exactly the IF removed this gene in one but not in the othe…
Comment: Can we get beta values with DMRcate package
by
Melisa Tecik
• 0
Thank you so much for the detailed explanation. I have loaded the package and already used dmrcate and extractRanges functions. I had no …
Comment: DESeq2: Gene is DEG in one experiment but not in the other depite similar baseMe
by
fjrsa
• 0
I would say baseMean, read counts, L2FC, ... are very similar between the two experiments - that's why I was wondering about the results. …
Comment: DESeq2: Gene is DEG in one experiment but not in the other depite similar baseMe
by
ATpoint
★ 4.6k
As said, literally identical on a continuous scale but different in categorical terms.
Votes
Comment: What type of counts data to import for performing Isoform analysis in edgeR
A: Relations used in GO.db GOBPANCESTOR
Relations used in GO.db GOBPANCESTOR
Answer: RSubread output significantly different from bash Subread output
Answer: RSubread output significantly different from bash Subread output
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