Showing : TCGA CNV • reset
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how to analyze TCGA CNV data
TCGA CNV correlation between mRNA exprssion and CNV
updated 8.8 years ago by • 0 • written 9.7 years ago by ▴ 10
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Using cn.MOPs to estimate CNVs in tumors without reference normal
cn.mops cnvtools tcga cnv
updated 9.1 years ago by ▴ 540 • written 9.1 years ago by ▴ 20
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Mapping genome regions to gene symbols
tcga cnv gene symbol coordinate
updated 2.1 years ago by 67k • written 9.6 years ago by ▴ 60
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Comment: Running multiple KNN queries in parallel by SamGG ▴ 360
Thank you for your detailed answer, I appreciate it and your work.
Answer: Running multiple KNN queries in parallel by Aaron Lun ★ 28k
That is correct - you can't pass the prebuilt objects to different processes. Maybe `MulticoreParam()` might work on POSIX systems but I'm …
Answer: RSubread output significantly different from bash Subread output by Gordon Smyth 52k
The difference (as ATpoint has correctly pointed out) is that Rsubread::featureCounts counts multi-mapping reads by default whereas the com…
Answer: Deseq2 Error in solve.default(qr.R(qrx)) : 'a' (1 x 0) must be square by Michael Love 43k
I would check the rank of your model matrix, and perhaps meet with a local statistician who can help you create an appropriate design matri…
Comment: sva: get a sv for RIN scores by gabriel.hoffman ▴ 170
Agreed. I'll add that with small sample size, a covariate can explain some fraction of expression variation even under the null.
Votes
Answer: Running multiple KNN queries in parallel
Answer: Running multiple KNN queries in parallel
Answer: RSubread output significantly different from bash Subread output
Answer: RSubread output significantly different from bash Subread output
Answer: How to annotate a limma Elist raw class object with an annotation file
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