Bioconductor TXT

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EdgeR normalization fastq txt TMM

updated 2.0 years ago by Gordon Smyth 50k • written 8.5 years ago by hamidrezarazzaghian • 0

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qPCRset object nondetects r package txt

updated 7 months ago by Nat.Nataren • 0 • written 6.3 years ago by s.m.may • 0

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Files TXT

updated 4.5 years ago by Gordon Smyth 50k • written 4.5 years ago by ekl • 0

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Affymetrix CEL TXT

updated 4.4 years ago by James W. MacDonald 66k • written 4.4 years ago by pbachali ▴ 50

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Annotation GEO TXT

updated 4.5 years ago by Sean Davis 21k • written 4.5 years ago by ekl • 0

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read.table TXT

updated 4.5 years ago by James W. MacDonald 66k • written 4.5 years ago by ekl • 0

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r TXT codelink

8.8 years ago Agaz Hussain Wani ▴ 260

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Answer: Errors in chromosome annotation-biomaRt by James W. MacDonald 66k

If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …

Comment: Help with ENmix readidat by James W. MacDonald 66k

Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …

Comment: LRT, more than two conditions and pairwise comparisons by James W. MacDonald 66k

In that case, probably easiest to subset to the groups being compared.

Comment: Help with ENmix readidat by minardsmitha ▴ 10

Did you figure this out? I have the same issue.

Comment: LRT, more than two conditions and pairwise comparisons by boczniak767 ▴ 720

Thank you for response, apparently I still don't know much about statistics. In fact I want to campare time-profiles [and the LRT has been …

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Answer: Control group between 2 batches have different expression in RNAseq data

Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?

Comment: DESeq2- Mysterious interaction suppresses DEGs

Answer: DESeq2- Mysterious interaction suppresses DEGs

Answer: Subsetting RNAseq data | voomaByGroup()

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