Bioconductor TimeSeriesExperiment

Showing : TimeSeriesExperiment • reset

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1.9k

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R GillespieColin ArrayExpress import TimeSeriesExperiment

updated 7 months ago by jacorvar ▴ 40 • written 18 months ago by eraldagjika ▴ 20

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1.7k

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LRT Design DESeq2 doseResponse TimeSeriesExperiment

updated 2.7 years ago by Michael Love 41k • written 2.7 years ago by Mari • 0

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961

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QTL fourier TimeSeriesExperiment timecoursedata

3.1 years ago Daphne • 0

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915

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Proteomics limma repeatedmeasures TimeSeriesExperiment

18 months ago proteome_AO • 0

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811

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TimeSeriesExperiment Regression top limma

updated 2.7 years ago by James W. MacDonald 65k • written 2.7 years ago by Eleni • 0

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799

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TimeSeriesExperiment RNASeq design DESeq2

updated 2.4 years ago by Michael Love 41k • written 2.4 years ago by Kesava • 0

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791

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TimeSeriesExperiment

updated 3.0 years ago by Michael Love 41k • written 3.0 years ago by curiousmind007 ▴ 10

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773

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DESeq2 single-timeseries TimeSeriesExperiment

updated 19 months ago by Michael Love 41k • written 20 months ago by Jigyasa • 0

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643

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DESeq2 MultipleFactors TimeSeriesExperiment

updated 20 months ago by Michael Love 41k • written 20 months ago by Maria • 0

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626

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DESeq2 TimeSeriesExperiment

updated 19 months ago by Michael Love 41k • written 19 months ago by Jason • 0

10 results • Page 1 of 1

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Comment: Why does GSEA on edgeR results for randomized samples give highly significant p- by Chris • 0

Intent to delete when going home. Sorry for that!

Comment: Why does GSEA on edgeR results for randomized samples give highly significant p- by Gordon Smyth 50k

Please ask you own question. Inserting your own dataset into someone else's question like this is very impolite. I have already answered m…

Comment: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 for all platforms without any issues. It has not had any period of …

Comment: package goseq seems to be not available on the latest version of R by Patrycja ▴ 20

limma package also isn't available.Is there any information when these packages will be available?

Comment: Why does GSEA on edgeR results for randomized samples give highly significant p- by Chris • 0

Thanks Gordon for the advice!

Votes

Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-

Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-

Handling multiple differential expression comparisons

Answer: fgsea significant result

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