Showing : TopGo • reset
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topGO quick start guide error
topGO topGO
updated 12.8 years ago by 68k • written 12.8 years ago by ▴ 100
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1
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1.8k
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enrichment + topGO
Annotation GO topGO Annotation GO topGO
updated 13.0 years ago by ▴ 750 • written 13.0 years ago by ▴ 20
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2
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1.1k
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topGO: full-length descriptions in graph output
GO topGO GO topGO
updated 13.1 years ago by 68k • written 13.1 years ago by ★ 13k
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1
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1.0k
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FW: Gene list annotation
Annotation GO annotate limma GOstats topGO Annotation GO annotate limma GOstats topGO
updated 13.4 years ago by 21k • written 13.4 years ago by ▴ 10
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3
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1.9k
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topGO dependency: Rgrapphviz
GO Rgraphviz topGO GO Rgraphviz topGO
updated 13.4 years ago by ★ 8.2k • written 13.4 years ago by ▴ 20
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1
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4.0k
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problems generating a gene2GOlist in topGO
Genetics Annotation GO hgu95av2 convert biomaRt topGO Genetics Annotation GO hgu95av2
updated 13.6 years ago by ▴ 400 • written 13.6 years ago by ▴ 510
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1
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1.3k
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How to install topGO on R version 2.14.0
topGO topGO
updated 13.7 years ago by 21k • written 13.7 years ago by ★ 13k
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0
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2.5k
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TopGO p-values VS DAVID p-values
Microarray GO Category topGO Microarray GO Category topGO
13.7 years ago Paul Geeleher ★ 1.3k
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2.2k
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topGO error, likely from topDiffGenes method of selection
Microarray topGO Microarray topGO
13.9 years ago oystercow ▴ 20
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990
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topGO using de novo assembled transcriptome
Microarray topGO Microarray topGO
13.9 years ago oystercow ▴ 20
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0
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1.4k
views
topGO graph visualization functions crashing under R 2.13.2 with Graphviz 2.20.3.1
GO Visualization graph Rgraphviz topGO GO Visualization graph Rgraphviz topGO
14.0 years ago Joseph Skaf ▴ 20
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2
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4.2k
views
Problems creating topGOdata object!
GO topGO GO topGO
updated 14.1 years ago by ★ 6.8k • written 14.1 years ago by ▴ 80
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945
views
LEA graph correction in topGO
GO graph topGO GO graph topGO
14.2 years ago tom carroll ▴ 10
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0
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2.3k
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Visualising the GO structure (RNA-seq) using topGO, and goseq
Microarray GO Visualization graph topGO goseq Microarray GO Visualization graph topGO
14.5 years ago Paolo Sonego ▴ 140
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2.1k
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GO with R and Bioconductor
Transcription Annotation GO GOstats biomaRt topGO GSEABase goseq Transcription Annotation
14.6 years ago Duke ▴ 210
0
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5
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2.8k
views
GO with R and Bioconductor
Transcription GO GOstats biomaRt topGO goseq Transcription GO GOstats biomaRt topGO
updated 14.6 years ago by 6.7k • written 14.6 years ago by ▴ 210
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4
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1.7k
views
topGO sensitive to the order of "interesting" gene ids
GO topGO GO topGO
updated 14.7 years ago by ▴ 400 • written 14.7 years ago by ▴ 110
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4
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2.1k
views
subset ontology from entire GO db using topGO
GO topGO GO topGO
updated 14.8 years ago by ★ 7.2k • written 14.8 years ago by ▴ 20
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0
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1.1k
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subset ontology terms from entire GO db using topGO
GO topGO GO topGO
14.8 years ago Paul Rigor ▴ 110
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1
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1.9k
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extracting topGO gene ids from result object
Annotation GO graph GOstats topGO Annotation GO graph GOstats topGO
updated 14.8 years ago by ▴ 20 • written 14.8 years ago by ▴ 400
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3
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4.4k
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extracting topGO gene ids from result object
Annotation GO topGO Annotation GO topGO
updated 14.8 years ago by ★ 6.8k • written 14.8 years ago by ▴ 110
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0
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899
views
extracting IDs from topGO results object
Annotation GO topGO Annotation GO topGO
14.8 years ago Paul Rigor ▴ 20
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1
reply
3.2k
views
topGO and Arabidopsis data
Annotation GO ath1121501 topGO Annotation GO ath1121501 topGO
updated 14.9 years ago by ▴ 400 • written 14.9 years ago by ▴ 30
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2
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2.4k
views
help in downloading some packages.
goTools sigPathway topGO goTools sigPathway topGO
updated 15.0 years ago by ▴ 550 • written 15.0 years ago by ▴ 100
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1
reply
1.1k
views
topGO in combination with Agilent arrays
GO topGO GO topGO
updated 15.1 years ago by 68k • written 15.1 years ago by ▴ 60
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1
reply
1.9k
views
topGO documentation / clarification
Microarray GO topGO Microarray GO topGO
updated 15.2 years ago by ▴ 400 • written 15.2 years ago by ▴ 60
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0
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1.2k
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topGO:what is the good way to work out FDR?
GO topGO GO topGO
15.5 years ago jiayu wen ▴ 60
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0
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1.4k
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mistmatch in GO terms between topGO_1.14.0 and org.Mm.eg.db_2.3.6
Annotation GO Mus musculus PROcess topGO Annotation GO Mus musculus PROcess topGO
15.6 years ago Dick Beyer ★ 1.4k
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1.7k
views
mistmatch in GO terms between topGO_1.14.0 and org.Mm.eg.db_2.3.6
GO Mus musculus PROcess topGO GO Mus musculus PROcess topGO
updated 15.6 years ago by 21k • written 15.6 years ago by ★ 1.4k
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0
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1.8k
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topGO results visualisation question
graph topGO graph topGO
15.8 years ago Iain Gallagher ▴ 930
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0
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1.2k
views
GenTable of topGO
topGO topGO
16.0 years ago Vijay Kumar ▴ 40
0
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4
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2.2k
views
Gene Ontology analysis for non-affy data
GO GOstats topGO GO GOstats topGO
updated 16.1 years ago by ▴ 400 • written 16.1 years ago by ▴ 50
4
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2
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3.2k
views
error with display of significant nodes using topGO
GO hgu133plus2 topGO GO hgu133plus2 topGO
updated 16.1 years ago by ▴ 400 • written 16.1 years ago by ▴ 340
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0
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1.3k
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How to compare GO results
Annotation GO topGO goProfiles Annotation GO topGO goProfiles
16.1 years ago Johannes Hanson ▴ 30
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2
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1.1k
views
How to compare GO results
GO topGO GO topGO
updated 16.2 years ago by ▴ 90 • written 16.2 years ago by ▴ 30
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3
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3.4k
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annFUN.gene2GO in topGO package
topGO topGO
16.2 years ago Leonor Palmeira ▴ 100
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0
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785
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Fwd: Re: which package can do GSEA for no model organism
Annotation GO Organism GOstats topGO ASSIGN Annotation GO Organism GOstats topGO ASSIGN
16.3 years ago Pengcheng Yang ▴ 40
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2
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2.4k
views
GO terms for E. coli micro arrays (ecoliK12.db generation)
Annotation GO Yeast db0 probe topGO AnnotationDbi Annotation GO Yeast db0 probe topGO
updated 16.3 years ago by ★ 7.2k • written 16.3 years ago by ▴ 20
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3
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1.8k
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question using GSEABase
GO GOstats topGO GSEABase GO GOstats topGO GSEABase
updated 16.4 years ago by 25k • written 16.4 years ago by ▴ 80
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0
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970
views
GOstats Annotation Package
Microarray Annotation GO GOstats topGO AnnotationDbi Microarray Annotation GO GOstats
16.6 years ago Jörg ▴ 40
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1
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1.6k
views
GOstats Annotation Package
Microarray Annotation GOstats topGO Microarray Annotation GOstats topGO
updated 16.6 years ago by ▴ 730 • written 16.6 years ago by ▴ 40
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3
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2.9k
views
How to create a GO2gene object for topGO?
GO topGO GO topGO
updated 17.0 years ago by ★ 3.4k • written 17.0 years ago by ▴ 100
0
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1
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1.7k
views
GOstats-compatible annotation package for Helicobacter pylori 26995
Annotation AnnBuilder GOstats topGO Annotation AnnBuilder GOstats topGO
updated 17.0 years ago by ★ 7.2k • written 17.0 years ago by ▴ 70
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4
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2.5k
views
topGO problem
GO cdf affy topGO GO cdf affy topGO
17.0 years ago Iain Gallagher ▴ 930
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2
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2.2k
views
TopGO - GenTable parameters
GO topGO GO topGO
17.0 years ago balag Ganesan ▴ 140
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0
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896
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Post hyperGTest : drawing GO graphs
GO Yeast GOstats topGO GO Yeast GOstats topGO
17.0 years ago balag Ganesan ▴ 140
0
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3
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1.8k
views
topGO question
Annotation GO topGO Annotation GO topGO
updated 17.1 years ago by ▴ 400 • written 17.1 years ago by ▴ 310
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0
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1.8k
views
topGO and font size in the graph plots
graph Rgraphviz topGO graph Rgraphviz topGO
17.1 years ago michael watson IAH-C ★ 3.4k
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1
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2.4k
views
object "annFUN.db" not found in topGO
GO topGO GO topGO
updated 17.1 years ago by ▴ 730 • written 17.1 years ago by ▴ 10
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2
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1.8k
views
Problems loading SparseM
topGO topGO
updated 17.1 years ago by 21k • written 17.1 years ago by ▴ 310
211 results • Page 4 of 5
Recent ...
Replies
Comment: Help with defining groups by Phinney, Brett ▴ 10
I got it working , thank you!!!
Comment: Check removeBatchEffect effectiveness by massimo • 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Answer: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
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