Bioconductor Vranges

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somaticsignatures vranges readvcfasvranges

7.1 years ago guillaume.dachy • 0

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2.3k

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variantannotation vcf readvcf vranges

updated 7.3 years ago by Michael Lawrence ★ 11k • written 7.3 years ago by david.mas • 0

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1.6k

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variantannotation VRanges R Rle

updated 7.3 years ago by Valerie Obenchain ★ 6.8k • written 7.3 years ago by Jayendra Shinde • 0

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somaticsignatures somaticsignatures package readvcfasvranges vranges

8.2 years ago • updated 8.1 years ago guillaume.dachy • 0

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1.7k

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vranges vcf to vranges

8.8 years ago Bogdan ▴ 670

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2.3k

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somaticsignatures vranges

updated 9.3 years ago by Julian Gehring ★ 1.3k • written 9.3 years ago by arsala521 ▴ 10

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2.0k

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granges vranges readvcfasvranges somaticsignatures

updated 9.5 years ago by Michael Lawrence ★ 11k • written 9.5 years ago by jpluta26 • 0

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SomaticSignatures mutationContext VRanges

updated 10.1 years ago by Julian Gehring ★ 1.3k • written 10.1 years ago by tesa.severson ▴ 10

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2.9k

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variantannotation vranges readvcf readvcfasvranges metadata

10.6 years ago summerela • 0

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3.9k

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variantannotation granges DNAStringSetList findoverlaps Vranges

10.6 years ago summerela • 0

10 results • Page 1 of 1

Recent ...

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Comment: Help with defining groups by Phinney, Brett ▴ 10

I got it working , thank you!!!

Comment: Check removeBatchEffect effectiveness by massimo • 0

I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…

Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0

Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.

Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k

Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…

Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k

Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…

Votes

Comment: Check removeBatchEffect effectiveness

Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)

Answer: Error Loading Experiment from SimBenchData Package

Comment: incomplete imputation of missing values with LEA impute() function

Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce

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