Bioconductor WALD

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18k

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deseq2 wald

updated 2.5 years ago by Michael Love 42k • written 9.2 years ago by deena ▴ 20

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1.2k

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deseq2 ribosome profiling wald lrt

updated 5.3 years ago by Michael Love 42k • written 5.3 years ago by indrik.wijaya ▴ 20

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957

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DESeq2 wald stat

updated 20 months ago by Peter Hickey ▴ 740 • written 20 months ago by eve.olszanowski • 0

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2.6k

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deseq2 wald lrt genes significance

updated 7.9 years ago by Michael Love 42k • written 7.9 years ago by aziza ▴ 20

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1.5k

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etLRT WALD edgeR DESEq

updated 2.7 years ago by Michael Love 42k • written 2.7 years ago by aiswaryabioinfo • 0

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4.0k

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rnaseq deseq2 lrt wald differential gene expression

updated 2.1 years ago by krushnach80 • 0 • written 6.7 years ago by chrysanthi.taxiarchi12 • 0

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1.9k

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deseq2 LRT WALD

updated 4.8 years ago by Michael Love 42k • written 4.8 years ago by annesoalvarez • 0

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1.0k

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GENESIS zscore wald

updated 4.6 years ago by Stephanie M. Gogarten ▴ 870 • written 4.6 years ago by lassana.a.samarakoon ▴ 10

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710

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deseq2 LRT wald

updated 4.2 years ago by Kevin Blighe ★ 3.9k • written 4.2 years ago by jnaviapelaez ▴ 10

9 results • Page 1 of 1

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Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu by James W. MacDonald 65k

I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?

Answer: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k

If you fit a cell means model (without an intercept), you will have to construct contrasts using `makeContrasts` and fit them using `contra…

Comment: Memory errors using read.bismark? by Juan Higareda • 0

Thanks a lot Peter, We solved the problem, IT had implemented a policy of RAM usage that started a conflict with any RAM-hungry process, m…

Answer: meffil.snp.concordance by James W. MacDonald 65k

This support site is meant to help people with technical questions about Bioconductor packages. The `meffil` package is not Bioconductor, n…

Answer: minfi latest update for EPIC V2 chip by James W. MacDonald 65k

Zuguang Gu submitted both of those packages as part of the current release, and I submitted a PR for `minfi` so it will now distinguish the…

Votes

Answer: How to save the DEXSeq results

Answer: minfi support of illumina Infinium methylationEPIC v2.0

Comment: minfi support of illumina Infinium methylationEPIC v2.0

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Help with running egsea()

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