Bioconductor Ribosome profiling

Showing : ribosome profiling • reset

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680

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deseq2 differential translation ribosome profiling

updated 3.9 years ago by Michael Love 40k • written 3.9 years ago by katerinadouka91 • 0

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962

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aligning ribosome profiling RNA-Seq

4.1 years ago Crispy • 0

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1.0k

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deseq2 ribosome profiling wald lrt

updated 4.8 years ago by Michael Love 40k • written 4.8 years ago by indrik.wijaya ▴ 20

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1.8k

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deseq2 sequencing ribosome profiling riboseq multiple factor design

updated 5.2 years ago by Michael Love 40k • written 5.2 years ago by kotcha.m ▴ 10

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2.4k

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deseq2 ribosome profiling

updated 5.3 years ago by Michael Love 40k • written 5.3 years ago by xiaozhuo ▴ 10

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858

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R riboseqr ribosome profiling

5.6 years ago bsad • 0

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592

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riboprofiling ribosome profiling

6.1 years ago nicholsonangela7 • 0

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1.6k

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biomart bioconductor grangeslist cds ribosome profiling

updated 6.4 years ago by Hervé Pagès 16k • written 6.4 years ago by Walter F. Baumann ▴ 10

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1.9k

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deseq2 translation efficiency spikes ribosome profiling

6.9 years ago GFM ▴ 20

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1.5k

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riboseqr ribosome profiling

updated 7.6 years ago by Thomas J Hardcastle ▴ 180 • written 7.6 years ago by alper.celik • 0

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1.4k

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R riboseqr ribosome profiling

7.9 years ago ohtack9 • 0

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2.0k

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deseq2 linear model ribosome profiling stats

updated 8.2 years ago by Ryan C. Thompson 7.8k • written 8.2 years ago by Jake ▴ 90

12 results • Page 1 of 1

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Answer: tximport error: vroom by Michael Love 40k

Check that they all have same number of lines. I guess one of them was interrupted while writing out and may need to be re-run (Salmon).

Comment: tximport error: vroom by Kevin Blighe 3.8k

Cross-posted: https://www.biostars.org/p/9576578/

Comment: Exporting DESeq2 filtered results by James W. MacDonald 63k

I am interested to know what part of my response you found rude. I asked nicely that you don't add to ancient posts, said your post isn't r…

Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k

> I can imagine writing a sparse high-dimensional array in HDF5, but I'm still not sure how to implement the part where it is read and imme…

Comment: Speeding up of DelayedArray::write_block() by Hervé Pagès 16k

Not in BioC 3.18. At some point (e.g. in 6 months) they will be deprecated, then 6 months later (i.e. in 1 year) they will be defunct, then…

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Comment: Speeding up of DelayedArray::write_block()

Unclear of calculating correlations with case+control samples together

Answer: Error MakeOrgPackagefromNCBI

Batch Effect in DESeq2, how to control, how to remove it, how to address biological question

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