Bioconductor Genes

Showing : genes • reset

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193

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DESeq2 genes Differential expressed

24 days ago • updated 20 days ago Syed Zaheer ▴ 10

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349

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GeneSetEnrichment genes genetogo

updated 11 months ago by Basti ▴ 720 • written 11 months ago by Noy • 0

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396

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R microRNA genes binding Site

3.9 years ago pengu447 • 0

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744

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edger differential expression genes fold change

updated 3.9 years ago by Aaron Lun ★ 28k • written 3.9 years ago by ilovesuperheroes1993 • 0

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497

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deseq2 genes expression

updated 4.2 years ago by Michael Love 40k • written 4.2 years ago by UserAnonyme • 0

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792

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topGO significant enrichment genes IDs

4.4 years ago David ROUX ▴ 20

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629

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deseq2 variance genes

updated 5.5 years ago by Michael Love 40k • written 5.5 years ago by hs.lansdell ▴ 20

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905

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cnv genes genomic ranges splitByOverlap

updated 6.1 years ago by Martin Morgan 25k • written 6.1 years ago by julrodr80 ▴ 30

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571

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deseq2 genes

updated 6.8 years ago by Michael Love 40k • written 6.8 years ago by silviajserrano • 0

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2.3k

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deseq2 wald lrt genes significance

updated 7.0 years ago by Michael Love 40k • written 7.0 years ago by aziza ▴ 20

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1.9k

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heatmap rownames genes

7.7 years ago johnlee.johnson • 0

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941

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datasets genes gene expression

updated 7.8 years ago by Steve Lianoglou 13k • written 7.8 years ago by vavecilla • 0

12 results • Page 1 of 1

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Comment: Extract Limma Adjusted Values for Plotting by phelankj • 0

Thanks, on the normalized values using the same formula?

Answer: Extract Limma Adjusted Values for Plotting by James W. MacDonald 63k

You should use `removeBatchEffect` for that.

Comment: Interpret plot from DiffBind by Chris • 0

Thank you for the explanation! The purple (**gain**) in the control in the right bottom corner but on the y axis is labeled **loss** which …

Comment: Use with_go along with other filters in getBM function by RuBBiT0 ▴ 10

Thank you! I think that makes much sense to me.

Comment: Interpret plot from DiffBind by Rory Stark ★ 4.9k

Not necessarily. It look to me like there is reconfiguring going on, with some chromatin that was open in the control becoming closed (the …

Votes

Answer: NA transcript values in my Txdb

Comment: Interpret plot from DiffBind

Answer: Use with_go along with other filters in getBM function

Answer: Interpret plot from DiffBind

Awards • All

Scholar to Mike Smith ★ 6.0k