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genes
•
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0
votes
2
replies
714
views
Deseq2 design
DESeq2
genes
Differential
expressed
21 months ago
Syed Zaheer
▴ 10
0
votes
1
reply
1.3k
views
enrichment to common gene
GeneSetEnrichment
genes
genetogo
updated 2.7 years ago by
Basti
▴ 780 • written 2.7 years ago by
Noy
• 0
0
votes
1
reply
802
views
find genes near a microRNA binding site
R
microRNA
genes
binding Site
5.6 years ago
pengu447
• 0
2
votes
4
replies
1.6k
views
Majority upregulated genes in edgeR
edger
differential expression
genes
fold change
updated 5.6 years ago by
Aaron Lun
★ 28k • written 5.7 years ago by
ilovesuperheroes1993
• 0
1
vote
2
replies
916
views
Two factors design with DESEq2
deseq2
genes
expression
updated 5.9 years ago by
Michael Love
43k • written 5.9 years ago by
UserAnonyme
• 0
1
vote
1
reply
1.3k
views
How to retreive topGO significant IDs of genes after enrichment test ?
topGO
significant
enrichment
genes
IDs
6.1 years ago
David ROUX
▴ 20
0
votes
1
reply
1.1k
views
Running DESeq2 on top variable genes?
deseq2
variance
genes
updated 7.2 years ago by
Michael Love
43k • written 7.2 years ago by
hs.lansdell
▴ 20
2
votes
2
replies
1.2k
views
list fo genes by cnv
cnv
genes
genomic ranges
splitByOverlap
updated 7.9 years ago by
Martin Morgan
25k • written 7.9 years ago by
julrodr80
▴ 30
0
votes
1
reply
814
views
No differentyally expresses genes
deseq2
genes
updated 8.5 years ago by
Michael Love
43k • written 8.5 years ago by
silviajserrano
• 0
0
votes
3
replies
2.9k
views
Wald vs LRT: different number of significant genes when testing the same coefficient
deseq2
wald
lrt
genes
significance
updated 8.7 years ago by
Michael Love
43k • written 8.7 years ago by
aziza
▴ 20
0
votes
1
reply
2.7k
views
Display subset of rownames in large heatmap?
heatmap
rownames
genes
9.4 years ago
johnlee.johnson
• 0
0
votes
2
replies
1.5k
views
Help needed to identify common genes among datasets
datasets
genes
gene expression
updated 9.5 years ago by
Steve Lianoglou
★ 13k • written 9.5 years ago by
vavecilla
• 0
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> Is it necessary to piece together the individual steps manually (e.g. aggregateReference, trainSingleR, classifySingleR, combineRecompute…
Answer: Automatically install dependencies
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ATpoint
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The BiocManager, which is sort of an extended wrapper around `install.packages`, installs all R dependencies. If you see errors then this i…
Answer: To count or not to count multi-overlapping reads?
by
Gordon Smyth
52k
> How does it handle reads that map to a gene that is located in a region that also has another gene but on the alternate strand? Overlapp…
Comment: Weird p-values using DESeq2?
by
ATpoint
★ 4.7k
This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `normTransform()…
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