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genes
•
reset
0
votes
2
replies
571
views
Deseq2 design
DESeq2
genes
Differential
expressed
14 months ago
Syed Zaheer
▴ 10
0
votes
1
reply
1.0k
views
enrichment to common gene
GeneSetEnrichment
genes
genetogo
updated 2.1 years ago by
Basti
▴ 780 • written 2.1 years ago by
Noy
• 0
0
votes
1
reply
673
views
find genes near a microRNA binding site
R
microRNA
genes
binding Site
5.0 years ago
pengu447
• 0
2
votes
4
replies
1.4k
views
Majority upregulated genes in edgeR
edger
differential expression
genes
fold change
updated 5.1 years ago by
Aaron Lun
★ 28k • written 5.1 years ago by
ilovesuperheroes1993
• 0
1
vote
2
replies
783
views
Two factors design with DESEq2
deseq2
genes
expression
updated 5.3 years ago by
Michael Love
42k • written 5.3 years ago by
UserAnonyme
• 0
1
vote
1
reply
1.2k
views
How to retreive topGO significant IDs of genes after enrichment test ?
topGO
significant
enrichment
genes
IDs
5.5 years ago
David ROUX
▴ 20
0
votes
1
reply
969
views
Running DESeq2 on top variable genes?
deseq2
variance
genes
updated 6.7 years ago by
Michael Love
42k • written 6.7 years ago by
hs.lansdell
▴ 20
2
votes
2
replies
1.1k
views
list fo genes by cnv
cnv
genes
genomic ranges
splitByOverlap
updated 7.3 years ago by
Martin Morgan
25k • written 7.3 years ago by
julrodr80
▴ 30
0
votes
1
reply
737
views
No differentyally expresses genes
deseq2
genes
updated 8.0 years ago by
Michael Love
42k • written 8.0 years ago by
silviajserrano
• 0
0
votes
3
replies
2.7k
views
Wald vs LRT: different number of significant genes when testing the same coefficient
deseq2
wald
lrt
genes
significance
updated 8.1 years ago by
Michael Love
42k • written 8.1 years ago by
aziza
▴ 20
0
votes
1
reply
2.5k
views
Display subset of rownames in large heatmap?
heatmap
rownames
genes
8.9 years ago
johnlee.johnson
• 0
0
votes
2
replies
1.3k
views
Help needed to identify common genes among datasets
datasets
genes
gene expression
updated 8.9 years ago by
Steve Lianoglou
★ 13k • written 8.9 years ago by
vavecilla
• 0
12 results • Page
1 of 1
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Replies
Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
Awards
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Lluís Revilla Sancho
▴ 730
Popular Question
to
maltethodberg
▴ 180
Scholar
to
Michael Love
42k
Popular Question
to
Leonardo Collado Torres
★ 1.1k
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to
Gordon Smyth
51k
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