Bioconductor Genes

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481

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DESeq2 genes Differential expressed

11 months ago Syed Zaheer ▴ 10

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843

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GeneSetEnrichment genes genetogo

updated 22 months ago by Basti ▴ 770 • written 22 months ago by Noy • 0

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598

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R microRNA genes binding Site

4.8 years ago pengu447 • 0

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1.2k

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edger differential expression genes fold change

updated 4.8 years ago by Aaron Lun ★ 28k • written 4.8 years ago by ilovesuperheroes1993 • 0

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685

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deseq2 genes expression

updated 5.0 years ago by Michael Love 41k • written 5.0 years ago by UserAnonyme • 0

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1.1k

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topGO significant enrichment genes IDs

5.2 years ago David ROUX ▴ 20

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898

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deseq2 variance genes

updated 6.4 years ago by Michael Love 41k • written 6.4 years ago by hs.lansdell ▴ 20

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1.1k

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cnv genes genomic ranges splitByOverlap

updated 7.0 years ago by Martin Morgan 25k • written 7.0 years ago by julrodr80 ▴ 30

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697

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deseq2 genes

updated 7.7 years ago by Michael Love 41k • written 7.7 years ago by silviajserrano • 0

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2.6k

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deseq2 wald lrt genes significance

updated 7.8 years ago by Michael Love 41k • written 7.8 years ago by aziza ▴ 20

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2.4k

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heatmap rownames genes

8.6 years ago johnlee.johnson • 0

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1.2k

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datasets genes gene expression

updated 8.6 years ago by Steve Lianoglou ★ 13k • written 8.6 years ago by vavecilla • 0

12 results • Page 1 of 1

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Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0

Thank you!

Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240

They are reorder in the decreasing order.

Comment: significant difference of p-values with dream() after updating VariancePartition by Le • 0

Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…

Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs by sredemption • 0

Try library(enrichplot) dotplot(gsea_FS, showCategory=10, split=".sign") + facet_grid(.~.sign)

Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0

Thank you for your reply and I know there is another post similar to this you had mentioned this. How are the genes that I mentioned in the…

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How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos

Using GRanges and IRanges to simply get all chromosome data

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