Bioconductor Wald

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670

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DESeq2 LRT Wald

updated 5 months ago by James W. MacDonald 67k • written 5 months ago by Eric • 0

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1.3k

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DESeq2 wald stat

updated 2.4 years ago by Peter Hickey ▴ 750 • written 2.4 years ago by eve.olszanowski • 0

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1.9k

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etLRT WALD edgeR DESEq

updated 3.4 years ago by Michael Love 43k • written 3.4 years ago by aiswaryabioinfo • 0

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918

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deseq2 LRT wald

updated 4.9 years ago by Kevin Blighe ★ 4.0k • written 4.9 years ago by jnaviapelaez ▴ 10

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1.2k

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GENESIS zscore wald

updated 5.3 years ago by Stephanie M. Gogarten ▴ 890 • written 5.3 years ago by lassana.a.samarakoon ▴ 10

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2.1k

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deseq2 LRT WALD

updated 5.5 years ago by Michael Love 43k • written 5.5 years ago by annesoalvarez • 0

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1.5k

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deseq2 ribosome profiling wald lrt

updated 6.1 years ago by Michael Love 43k • written 6.1 years ago by indrik.wijaya ▴ 20

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4.4k

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rnaseq deseq2 lrt wald differential gene expression

updated 2.8 years ago by chm • 0 • written 7.4 years ago by chrysanthi.taxiarchi12 • 0

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2.9k

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deseq2 wald lrt genes significance

updated 8.6 years ago by Michael Love 43k • written 8.6 years ago by aziza ▴ 20

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19k

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deseq2 wald

updated 3.2 years ago by Michael Love 43k • written 9.9 years ago by deena ▴ 20

10 results • Page 1 of 1

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Answer: Unable to find sample sheet file for ChAMP methylation data analysis by James W. MacDonald 67k

There is an example file in the extdata directory of the `minfiData` package that you could emulate.

Comment: Rain error: invalid annotation of time points by Dominik • 0

Hi, I kept running into the same issue until I double checked their help and understood, that columns and rows have to be designed in anoth…

Answer: How to generate circular cnetplot and color nodes and edges in the same plot ? by Guido Hooiveld ★ 4.1k

Since the release of `enrichplot` of October 2024, the code of the function `cnetplot` has been completely rewritten by Guangchuang in orde…

Comment: CUT&Tag differential peak analysis using Diffbind, with pre-calculated normaliza by mec25 • 0

I am unable to find the math behind the dba.normalize(), for instance when the E-coli fraction is used is the signal mutliplied by the fact…

Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by Quang NN ▴ 10

Thank you so much for taking time to provide this clarification!

Votes

Answer: DESeq2- merging technical vs biological replicates

Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

Answer: EdgeR Biological CVs

Answer: Error in download.file for TCGAutils::symbolsToRanges

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