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a4
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2.8k
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BIRD 2008
Genetics
Pathways
Cancer
PROcess
microRNA
a4
Genetics
Pathways
Cancer
PROcess
microRNA
16.5 years ago
Prof. Roland Wagner
▴ 100
0
votes
2
replies
1.5k
views
read.ilmn function query
probe
limma
a4
probe
limma
a4
updated 12.8 years ago by
Gordon Smyth
50k • written 12.8 years ago by
Natasha
▴ 440
0
votes
0
replies
1.0k
views
HTqPCR, changeCtLayout is mislabeling the rows and is unable to return a qPCRset object
a4
a4
11.4 years ago
Guest User
★ 13k
0
votes
1
reply
1.0k
views
calcNormFactors gives me NaN
RNASeq
edgeR
a4
RNASeq
edgeR
a4
updated 10.4 years ago by
Ryan C. Thompson
★ 7.9k • written 10.4 years ago by
Guest User
★ 13k
0
votes
0
replies
972
views
Design question in LIMMA
Normalization
limma
a4
Normalization
limma
a4
18.5 years ago
Nataliya Yeremenko
▴ 100
0
votes
0
replies
910
views
technical replicates (different subset repeated on different print runs within experiment)
a4
a4
18.6 years ago
Margaret Gardiner-Garden
▴ 160
0
votes
0
replies
950
views
Design question in LIMMA
Normalization
limma
a4
Normalization
limma
a4
18.5 years ago
Gordon Smyth
50k
0
votes
3
replies
1.8k
views
"scale to fit" plot for A4 pdf
Cancer
a4
Cancer
a4
updated 17.1 years ago by
James W. MacDonald
65k • written 17.1 years ago by
Daniel Brewer
★ 1.9k
0
votes
5
replies
1.8k
views
Extremely low p-values in limma
limma
a4
limma
a4
updated 16.6 years ago by
Naomi Altman
★ 6.0k • written 16.6 years ago by
Pie Muller
▴ 110
0
votes
0
replies
786
views
Make a "subset" back
Normalization
GO
a4
Normalization
GO
a4
15.6 years ago
pchristoph@gmail.com
▴ 20
0
votes
2
replies
1.2k
views
biological reps and dye-swaps and duplicate spots in a common reference design
Yeast
limma
a4
Yeast
limma
a4
updated 15.5 years ago by
Jenny Drnevich
★ 2.0k • written 15.5 years ago by
sylvie pinloche
▴ 10
0
votes
1
reply
1.3k
views
maSigPro error in getting a design matrix
maSigPro
a4
maSigPro
a4
14.5 years ago
lohith madireddy
▴ 40
0
votes
0
replies
1.2k
views
maSigPro - NA values for coefficient estimates - Is a polynomical fit recommended for my data?
limma
maSigPro
a4
limma
maSigPro
a4
14.5 years ago
jeremy wilson
▴ 150
0
votes
1
reply
1.3k
views
Fwd: maSigPro - NA values for coefficient estimates - Is a polynomical fit recommended for my data?
Annotation
limma
maSigPro
a4
Annotation
limma
maSigPro
a4
updated 14.5 years ago by
jeremy wilson
▴ 150 • written 14.5 years ago by
Ana Conesa
▴ 340
0
votes
3
replies
1.3k
views
LIMMA experimental design affecting modelmatrix
Microarray
limma
a4
Microarray
limma
a4
updated 14.4 years ago by
James W. MacDonald
65k • written 14.4 years ago by
Aubin-Horth Nadia
▴ 60
0
votes
1
reply
1.4k
views
HTqPCR - how to read data file with multiple samples
HTqPCR
a4
HTqPCR
a4
updated 14.2 years ago by
Heidi Dvinge
★ 2.0k • written 14.2 years ago by
marco fabbri
▴ 320
0
votes
0
replies
1.1k
views
Limma analysis questions
limma
a4
limma
a4
12.6 years ago
Martin Janssen
▴ 10
0
votes
2
replies
1.2k
views
Problems normalizing scanarray express data with limma
GUI
limma
a4
GUI
limma
a4
updated 12.3 years ago by
Gordon Smyth
50k • written 12.3 years ago by
Matthew Ouellette
▴ 10
0
votes
1
reply
743
views
Bioconductor IT Security polici
a4
a4
updated 11.9 years ago by
Martin Morgan
25k • written 11.9 years ago by
Guest User
★ 13k
0
votes
0
replies
991
views
DiffBind error with DBA_DESEQ_GLM and warning with DBA_EDGE_GLM
a4
DiffBind
a4
DiffBind
11.8 years ago
Elisabetta Manduchi
▴ 160
0
votes
0
replies
1.5k
views
Biorad iCycler cfx manager files and HTqPCR
Microarray
qPCR
HTqPCR
a4
Microarray
qPCR
HTqPCR
a4
11.2 years ago
b1gorsuch@comcast.net
▴ 20
0
votes
1
reply
1.2k
views
calcNormFactors gives NaN normalization values- Please Help!
Normalization
a4
Normalization
a4
updated 10.4 years ago by
Mark Robinson
▴ 880 • written 10.4 years ago by
Guest User
★ 13k
0
votes
1
reply
3.3k
views
maSigPro help- p. vector error
RNASeq
maSigPro
a4
RNASeq
maSigPro
a4
updated 8.5 years ago by
Mª José Nueda
▴ 90 • written 10.2 years ago by
Guest User
★ 13k
23 results • Page
1 of 1
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Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
ATpoint
★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Answer: Improving the design matrices vignette in RNAseq123
by
Gordon Smyth
50k
Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! I'll review my code from top to bottom.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
James W. MacDonald
65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Votes
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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James W. MacDonald
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JKim
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to
Gordon Smyth
50k
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Chris
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Jonathan
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