Showing : acgh • reset
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1.6k
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ANN: Bioconductor Release 1.7 is available
aCGH Microarray Annotation Classification annotate edd hexbin SAGElyzer Rgraphviz RMAGEML
updated 18.6 years ago by ▴ 190 • written 18.6 years ago by ★ 7.4k
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5
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1.0k
views
Problems with aCGH library
aCGH aCGH aCGH aCGH
19.5 years ago Christopher, Neil NIH/NCI ▴ 70
0
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5
replies
1.1k
views
failure to install: aCGH depends on unavailable package
aCGH Cancer aCGH aCGH Cancer aCGH
updated 14.7 years ago by ★ 1.6k • written 14.7 years ago by ★ 1.1k
0
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4
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1.5k
views
snapCGH fails in runBioHMM
aCGH Microarray TwoChannel Cancer limma aCGH snapCGH aCGH Microarray TwoChannel Cancer
updated 15.0 years ago by ▴ 160 • written 15.0 years ago by ★ 1.1k
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4
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1.3k
views
Problem in reading JPEG files for CGH arrays
aCGH Genetics aCGH GLAD aCGH Genetics aCGH GLAD
updated 15.3 years ago by 21k • written 15.3 years ago by ▴ 360
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4
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1.4k
views
running time of snapCGH processCGH and runDNAcopy
aCGH Survival CGH annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH aCGH
updated 16.6 years ago by ▴ 230 • written 16.6 years ago by ▴ 110
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3
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1.0k
views
Scripts to handle array CGH data files from NimbleGen
aCGH Cancer Breast CGH aCGH aCGH Cancer Breast CGH aCGH
updated 17.9 years ago by ▴ 140 • written 17.9 years ago by ▴ 310
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3
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1.2k
views
Call for comments on analyzing aCGH data with huge number of probes on a single chromosome
aCGH aCGH aCGH aCGH
16.1 years ago pingzhao Hu ▴ 210
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3
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1.5k
views
Circular binary segmentation for allele-specific CN data
aCGH aCGH aCGH aCGH
updated 13.7 years ago by ▴ 550 • written 13.8 years ago by ▴ 20
0
votes
3
replies
1.6k
views
Bioconductor 2.3 is released
aCGH Sequencing miRNA Microarray Visualization Bayesian Classification Survival Yeast LPE
15.6 years ago Patrick Aboyoun ★ 1.6k
0
votes
3
replies
873
views
aCGH install requied sma
aCGH aCGH aCGH aCGH
updated 17.4 years ago by ★ 7.4k • written 17.4 years ago by ▴ 20
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2
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1.2k
views
Chromosome 23 and 24 dropped after run snapCGH processCGH
aCGH Survival Cancer annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH
updated 16.6 years ago by ▴ 40 • written 16.6 years ago by ▴ 110
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2
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972
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snapCGH question
aCGH aCGH snapCGH aCGH aCGH snapCGH
updated 17.1 years ago by 21k • written 17.1 years ago by ▴ 90
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votes
2
replies
1.2k
views
imputing missing data for 70mer array platform, need advice
aCGH CGH multtest impute aCGH oligo aCGH CGH multtest impute aCGH oligo
updated 17.3 years ago by 21k • written 17.3 years ago by ▴ 50
0
votes
2
replies
3.8k
views
Bioconductor 2.12 is released
BiocViews aCGH SNP Transcription Sequencing Microarray Coverage Alignment Annotation GO
updated 8.8 years ago by • 0 • written 11.1 years ago by ★ 8.2k
0
votes
2
replies
1.2k
views
CGHcall error
aCGH Normalization Cancer aCGH CGHcall copynumber aCGH Normalization Cancer aCGH CGHcall
updated 15.6 years ago by ▴ 110 • written 15.6 years ago by ▴ 40
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votes
2
replies
1.3k
views
GEOmetadb query
aCGH GO aCGH GEOmetadb aCGH GO aCGH GEOmetadb
updated 14.3 years ago by ▴ 170 • written 14.3 years ago by ▴ 10
0
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2
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1.2k
views
CGH-like workflow for Affymetrix SNP 500k
aCGH SNP Cancer DNAcopy aCGH aCGH SNP Cancer DNAcopy aCGH
updated 15.9 years ago by ★ 2.4k • written 15.9 years ago by ★ 1.9k
0
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2
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1.0k
views
snapCGH; export results of summarize.clones() function from aCGH
aCGH convert aCGH snapCGH aCGH convert aCGH snapCGH
16.9 years ago Ian Roberts ▴ 70
0
votes
1
reply
885
views
plot Genome in aCGH
acgh
updated 8.1 years ago by 25k • written 8.1 years ago by • 0
0
votes
1
reply
691
views
aCGH modify plotting method
aCGH aCGH aCGH aCGH
updated 19.5 years ago by 65k • written 19.5 years ago by ▴ 70
0
votes
1
reply
747
views
help needed for aCGH package
aCGH aCGH aCGH aCGH
updated 19.2 years ago by 21k • written 19.2 years ago by ★ 7.4k
0
votes
1
reply
833
views
problem with getting the right plot in aCGH
aCGH aCGH aCGH aCGH
updated 18.9 years ago by ★ 1.8k • written 18.9 years ago by ▴ 30
0
votes
1
reply
712
views
aCGH across samples
aCGH Cancer CGH aCGH aCGH Cancer CGH aCGH
updated 17.5 years ago by 21k • written 17.5 years ago by ★ 1.9k
0
votes
1
reply
882
views
Import GEO Soft format
aCGH Cancer aCGH aCGH Cancer aCGH
updated 17.4 years ago by ▴ 500 • written 17.4 years ago by ★ 1.9k
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1
reply
1.3k
views
snapCGH; export results of summarize.clones() function from aCGH
aCGH Survival Cancer Breast Biobase annotate genefilter geneplotter multtest limma aCGH
16.9 years ago Steven McKinney ▴ 310
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1
reply
1.2k
views
Imputation problem in aCGH
aCGH Biobase multtest impute aCGH aCGH Biobase multtest impute aCGH
16.8 years ago Benjamin Otto ▴ 830
0
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1
reply
809
views
Call for comments on analyzing aCGH data with huge number of probes on a single chromosome
aCGH aCGH aCGH aCGH
updated 16.1 years ago by 21k • written 16.1 years ago by ▴ 210
0
votes
1
reply
2.0k
views
Entrez Gene ID to Probe Set Name
aCGH Sequencing miRNA Microarray Annotation Normalization GO Preprocessing Visualization
updated 15.6 years ago by ★ 7.2k • written 15.6 years ago by ▴ 300
0
votes
1
reply
916
views
NimbleGen HG18 CGH data
aCGH CGH aCGH aCGH CGH aCGH
updated 14.8 years ago by 21k • written 14.8 years ago by ▴ 10
0
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1
reply
1.7k
views
how to import Agilent CGH custom design xml file into limma
aCGH CGH probe aCGH snapCGH aCGH CGH probe aCGH snapCGH
updated 13.6 years ago by 21k • written 13.6 years ago by ▴ 110
0
votes
1
reply
1.1k
views
Affymetrix 250K SNP aCGH
aCGH SNP Normalization affy aCGH aCGH SNP Normalization affy aCGH
updated 13.1 years ago by ▴ 210 • written 13.1 years ago by ▴ 330
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1
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1.0k
views
limma - NA values after withinarray normalization
aCGH Normalization limma aCGH aCGH Normalization limma aCGH
updated 11.8 years ago by 50k • written 11.8 years ago by ▴ 10
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1
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1.3k
views
Workflow for Agilent aCGH anlysis
aCGH aCGH aCGH aCGH
updated 11.5 years ago by ★ 13k • written 11.5 years ago by ▴ 10
0
votes
1
reply
979
views
aCGH telling me to run find.hmm.states before merge hmm.states even though I have.
aCGH aCGH aCGH aCGH
updated 10.7 years ago by ▴ 210 • written 10.7 years ago by ▴ 40
0
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1
reply
1.1k
views
Errors w/ getBioC(develOK =TRUE) with R2.0 devel
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
19.7 years ago Matthew Hannah ▴ 940
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0
replies
783
views
Problems with aCGH library
aCGH affy aCGH aCGH affy aCGH
18.8 years ago Justin Borevitz ▴ 170
0
votes
0
replies
691
views
aCGH package error: MAD
aCGH aCGH aCGH aCGH
16.5 years ago affy snp ▴ 640
0
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0
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1.2k
views
Bioconductor training course, Boston March 5-6-7 2008
aCGH SNP Genetics Annotation GO Visualization affy limma aCGH MLInterfaces Category SNP
16.3 years ago Vincent J. Carey, Jr. 6.7k
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0
replies
4.1k
views
Bioconductor 2.13 is released
BiocViews aCGH SNP Transcription Sequencing miRNA Microarray Genetics Proteomics Coverage
10.6 years ago Dan Tenenbaum ★ 8.2k
0
votes
0
replies
1.4k
views
Problem installing rmutil/repeated
aCGH aCGH aCGH aCGH
18.9 years ago J-C. Marioni ▴ 30
0
votes
0
replies
1.1k
views
Detecting overrepresented genomic loci
aCGH Clustering CGH geneplotter DNAcopy aCGH GLAD aCGH Clustering CGH geneplotter aCGH
19.1 years ago Yi, Andrew ▴ 20
0
votes
0
replies
957
views
DNAcopy
aCGH DNAcopy aCGH aCGH DNAcopy aCGH
14.3 years ago Anguraj Sadanandam ▴ 10
0
votes
0
replies
722
views
A question about criteria for calling gain and loss in aCGH data
aCGH Cancer aCGH aCGH Cancer aCGH
15.9 years ago affy snp ▴ 640
0
votes
0
replies
1.2k
views
Using aCGH library on Affymetrix Cytogenetics 2.7M microarray data
aCGH SNP PROcess aCGH aCGH SNP PROcess aCGH
11.5 years ago Guest User ★ 13k
0
votes
0
replies
674
views
help needed for aCGH package
aCGH Genetics aCGH aCGH Genetics aCGH
19.2 years ago Alberto Goldoni ▴ 360
0
votes
0
replies
4.1k
views
Bioconductor 2.14 is released
BiocViews aCGH SNP Sequencing RNASeq ChIPSeq miRNA Microarray qPCR Metabolomics Coverage
10.1 years ago Dan Tenenbaum ★ 8.2k
0
votes
0
replies
631
views
aCGH problem
aCGH aCGH aCGH aCGH
19.5 years ago Christopher, Neil NIH/NCI ▴ 70
0
votes
0
replies
1.1k
views
problems with getBioC() and getBioC(develOK=TRUE) on R 2.0.0
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
19.6 years ago rgentleman ★ 5.5k
0
votes
0
replies
1.1k
views
problems with getBioC() and getBioC(develOK=TRUE) on R 2.0.0
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
19.6 years ago Goeman, J.J. MSTAT ▴ 150
50 results • Page 1 of 1
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Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Ensembl plants at annotationHub? by Daniele • 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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