Showing : acgh • reset
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3
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aCGH install requied sma
aCGH aCGH aCGH aCGH
updated 17.4 years ago by ★ 7.4k • written 17.4 years ago by ▴ 20
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3
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1.2k
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Call for comments on analyzing aCGH data with huge number of probes on a single chromosome
aCGH aCGH aCGH aCGH
16.1 years ago pingzhao Hu ▴ 210
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5
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1.0k
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Problems with aCGH library
aCGH aCGH aCGH aCGH
19.5 years ago Christopher, Neil NIH/NCI ▴ 70
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6
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1.6k
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ANN: Bioconductor Release 1.7 is available
aCGH Microarray Annotation Classification annotate edd hexbin SAGElyzer Rgraphviz RMAGEML
updated 18.6 years ago by ▴ 190 • written 18.6 years ago by ★ 7.4k
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3
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1.0k
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Scripts to handle array CGH data files from NimbleGen
aCGH Cancer Breast CGH aCGH aCGH Cancer Breast CGH aCGH
updated 17.9 years ago by ▴ 140 • written 17.9 years ago by ▴ 310
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2
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1.3k
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GEOmetadb query
aCGH GO aCGH GEOmetadb aCGH GO aCGH GEOmetadb
updated 14.3 years ago by ▴ 170 • written 14.3 years ago by ▴ 10
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2
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1.2k
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Chromosome 23 and 24 dropped after run snapCGH processCGH
aCGH Survival Cancer annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH
updated 16.6 years ago by ▴ 40 • written 16.6 years ago by ▴ 110
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2
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3.8k
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Bioconductor 2.12 is released
BiocViews aCGH SNP Transcription Sequencing Microarray Coverage Alignment Annotation GO
updated 8.8 years ago by • 0 • written 11.1 years ago by ★ 8.2k
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2
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1.2k
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CGHcall error
aCGH Normalization Cancer aCGH CGHcall copynumber aCGH Normalization Cancer aCGH CGHcall
updated 15.6 years ago by ▴ 110 • written 15.6 years ago by ▴ 40
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3
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1.5k
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Circular binary segmentation for allele-specific CN data
aCGH aCGH aCGH aCGH
updated 13.7 years ago by ▴ 550 • written 13.7 years ago by ▴ 20
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2
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1.0k
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snapCGH; export results of summarize.clones() function from aCGH
aCGH convert aCGH snapCGH aCGH convert aCGH snapCGH
16.9 years ago Ian Roberts ▴ 70
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1
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1.6k
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how to import Agilent CGH custom design xml file into limma
aCGH CGH probe aCGH snapCGH aCGH CGH probe aCGH snapCGH
updated 13.5 years ago by 21k • written 13.5 years ago by ▴ 110
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1
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827
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problem with getting the right plot in aCGH
aCGH aCGH aCGH aCGH
updated 18.8 years ago by ★ 1.8k • written 18.8 years ago by ▴ 30
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1
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1.1k
views
Affymetrix 250K SNP aCGH
aCGH SNP Normalization affy aCGH aCGH SNP Normalization affy aCGH
updated 13.0 years ago by ▴ 210 • written 13.0 years ago by ▴ 330
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1
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1.2k
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Imputation problem in aCGH
aCGH Biobase multtest impute aCGH aCGH Biobase multtest impute aCGH
16.8 years ago Benjamin Otto ▴ 830
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1
reply
709
views
aCGH across samples
aCGH Cancer CGH aCGH aCGH Cancer CGH aCGH
updated 17.4 years ago by 21k • written 17.4 years ago by ★ 1.9k
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1
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1.0k
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limma - NA values after withinarray normalization
aCGH Normalization limma aCGH aCGH Normalization limma aCGH
updated 11.8 years ago by 50k • written 11.8 years ago by ▴ 10
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1
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1.3k
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Workflow for Agilent aCGH anlysis
aCGH aCGH aCGH aCGH
updated 11.5 years ago by ★ 13k • written 11.5 years ago by ▴ 10
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4
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1.4k
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running time of snapCGH processCGH and runDNAcopy
aCGH Survival CGH annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH aCGH
updated 16.6 years ago by ▴ 230 • written 16.6 years ago by ▴ 110
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1
reply
876
views
Import GEO Soft format
aCGH Cancer aCGH aCGH Cancer aCGH
updated 17.3 years ago by ▴ 500 • written 17.3 years ago by ★ 1.9k
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1
reply
795
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Call for comments on analyzing aCGH data with huge number of probes on a single chromosome
aCGH aCGH aCGH aCGH
updated 16.1 years ago by 21k • written 16.1 years ago by ▴ 210
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votes
1
reply
971
views
aCGH telling me to run find.hmm.states before merge hmm.states even though I have.
aCGH aCGH aCGH aCGH
updated 10.6 years ago by ▴ 210 • written 10.6 years ago by ▴ 40
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2
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1.2k
views
CGH-like workflow for Affymetrix SNP 500k
aCGH SNP Cancer DNAcopy aCGH aCGH SNP Cancer DNAcopy aCGH
updated 15.9 years ago by ★ 2.4k • written 15.9 years ago by ★ 1.9k
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1
reply
686
views
aCGH modify plotting method
aCGH aCGH aCGH aCGH
updated 19.4 years ago by 65k • written 19.4 years ago by ▴ 70
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1
reply
1.1k
views
Errors w/ getBioC(develOK =TRUE) with R2.0 devel
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
19.7 years ago Matthew Hannah ▴ 940
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2
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1.2k
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imputing missing data for 70mer array platform, need advice
aCGH CGH multtest impute aCGH oligo aCGH CGH multtest impute aCGH oligo
updated 17.3 years ago by 21k • written 17.3 years ago by ▴ 50
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1
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741
views
help needed for aCGH package
aCGH aCGH aCGH aCGH
updated 19.2 years ago by 21k • written 19.2 years ago by ★ 7.4k
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1
reply
2.0k
views
Entrez Gene ID to Probe Set Name
aCGH Sequencing miRNA Microarray Annotation Normalization GO Preprocessing Visualization
updated 15.5 years ago by ★ 7.2k • written 15.5 years ago by ▴ 300
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3
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1.6k
views
Bioconductor 2.3 is released
aCGH Sequencing miRNA Microarray Visualization Bayesian Classification Survival Yeast LPE
15.5 years ago Patrick Aboyoun ★ 1.6k
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4
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1.3k
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Problem in reading JPEG files for CGH arrays
aCGH Genetics aCGH GLAD aCGH Genetics aCGH GLAD
updated 15.3 years ago by 21k • written 15.3 years ago by ▴ 360
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4
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1.5k
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snapCGH fails in runBioHMM
aCGH Microarray TwoChannel Cancer limma aCGH snapCGH aCGH Microarray TwoChannel Cancer
updated 15.0 years ago by ▴ 160 • written 15.0 years ago by ★ 1.1k
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1
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914
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NimbleGen HG18 CGH data
aCGH CGH aCGH aCGH CGH aCGH
updated 14.8 years ago by 21k • written 14.8 years ago by ▴ 10
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5
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1.1k
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failure to install: aCGH depends on unavailable package
aCGH Cancer aCGH aCGH Cancer aCGH
updated 14.6 years ago by ★ 1.6k • written 14.6 years ago by ★ 1.1k
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2
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956
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snapCGH question
aCGH aCGH snapCGH aCGH aCGH snapCGH
updated 17.1 years ago by 21k • written 17.1 years ago by ▴ 90
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1
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1.3k
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snapCGH; export results of summarize.clones() function from aCGH
aCGH Survival Cancer Breast Biobase annotate genefilter geneplotter multtest limma aCGH
16.9 years ago Steven McKinney ▴ 310
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1.3k
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agilent aCGH analysis
aCGH aCGH aCGH aCGH
11.8 years ago Guest User ★ 13k
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4.1k
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Bioconductor 2.14 is released
BiocViews aCGH SNP Sequencing RNASeq ChIPSeq miRNA Microarray qPCR Metabolomics Coverage
10.1 years ago Dan Tenenbaum ★ 8.2k
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0
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1.2k
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readPositionalInfo in snapCGH for preparing CNA files for DNAcopy
aCGH DNAcopy aCGH snapCGH aCGH DNAcopy aCGH snapCGH
10.8 years ago Guest User ★ 13k
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1.2k
views
CGHCall problems
aCGH probe DNAcopy aCGH CGHcall aCGH probe DNAcopy aCGH CGHcall
10.8 years ago Guest User ★ 13k
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0
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2.4k
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8. CGHCall problems (Bernard North [guest]) : Bioconductor Digest, Vol 126, Issue 7
aCGH RNASeq ChIPSeq Proteomics Annotation Normalization GO Network Cancer ChipName probe
10.7 years ago Sarah JugurnauthLittle ▴ 20
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0
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4.0k
views
Bioconductor 2.13 is released
BiocViews aCGH SNP Transcription Sequencing miRNA Microarray Genetics Proteomics Coverage
10.6 years ago Dan Tenenbaum ★ 8.2k
0
votes
0
replies
988
views
calling aberrations after segmentation with \"copynumber\" package
aCGH aCGH copynumber aCGH aCGH copynumber
10.3 years ago Guest User ★ 13k
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1
reply
883
views
plot Genome in aCGH
acgh
updated 8.1 years ago by 25k • written 8.1 years ago by • 0
0
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0
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1.1k
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analysing NimbleGen CGH for CNV
aCGH probe aCGH snapCGH Ringo aCGH probe aCGH snapCGH Ringo
13.4 years ago Adeolu Adewoye ▴ 40
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0
replies
1.3k
views
Bioconductor 1.8 for R 2.3.0 is released!
BiocViews aCGH SNP Microarray Annotation GO Clustering Cancer Yeast cdf probe RMAGEML
18.0 years ago Seth Falcon ★ 7.4k
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0
replies
1.3k
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Problems with aCGH package
aCGH Genetics Cancer CGH impute aCGH aCGH Genetics Cancer CGH impute aCGH
19.9 years ago grischa tödt ▴ 30
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0
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1.0k
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Errors w/ getBioC()
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
19.7 years ago Matthew Hannah ▴ 940
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0
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1.1k
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problems with getBioC() and getBioC(develOK=TRUE) on R 2.0.0
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
19.6 years ago Goeman, J.J. MSTAT ▴ 150
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0
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1.1k
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problems with getBioC() and getBioC(develOK=TRUE) on R 2.0.0
aCGH GO Biobase DynDoc annotate edd genefilter geneplotter rhdf5 multtest ctc ROC affy
19.6 years ago rgentleman ★ 5.5k
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0
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628
views
aCGH problem
aCGH aCGH aCGH aCGH
19.4 years ago Christopher, Neil NIH/NCI ▴ 70
50 results • Page 1 of 1
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This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
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