Showing : affy • reset
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LIMMA : design (1, 2, 3, 3 ) , I got EXCITING results, what could be the logic, since i have 2 replicates for 3rd group only ?
affy affy
updated 9 weeks ago by 50k • written 19.0 years ago by ★ 1.1k
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11
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2.0k
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globaltest question
Pathways probe affy Pathways probe affy
written 17.7 years ago by ▴ 30
0
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5
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2.0k
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Normalizing Affy Almac Xcel Array Data from CEL files
Annotation affy oligo ffpe Annotation affy oligo ffpe
written 10.3 years ago by ★ 13k
1
vote
10
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454
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Obtaining pheno data from CEL files
GEO affy
4 weeks ago • updated 26 days ago Kurtis • 0
1
vote
3
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363
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frma normalization
frmaTools affy
updated 10 weeks ago by 65k • written 11 weeks ago by • 0
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2
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1.4k
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Minimum expression threshold?
multtest affy multtest affy
updated 8 months ago by • 0 • written 20.7 years ago by ▴ 20
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2
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Problem with maplot {affy} method when using rma {affy} method output as its input
maplot_function rma_function ExpressionSet MicroarrayData affy
5 weeks ago Mj.A. • 0
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6
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2.1k
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Error when Installing BioConductor Package ('affy')
Bioconductor Install affy
updated 5 months ago by ★ 4.1k • written 17 months ago by • 0
0
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1
reply
612
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affy package and SNP arrays
crlmm hapmapsnp6 genomewidesnp6Crlmm affy
updated 10 months ago by ★ 3.9k • written 10 months ago by 6.7k
9 results • Page 1 of 1
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Comment: SGSeq: moving toward diffex from SGSeq analysis by Sara • 0
Thank you for your response. I have another question about saving the sgvc result as a CSV file. I would appreciate your help, please. ``` …
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0
I tried different block lengths first and considered 100000 to be ideal because of the almost similar inter-range distance. S1= bootRange…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k
The segmentation and block length are key parameters. We recommend for example blocks of length ~500kb. It would help if you would post yo…
Answer: Handling multiple differential expression comparisons by Michael Love 41k
It's typical that results are presented with each group having its own FDR control. So presenting each comparison with the adjusted p-va…
Comment: Too many significant genes when integrating gtex and tcga by ATpoint ★ 4.1k
These two datasets are from completely different experiments / batches. It is utterly meaningless to compare them. I would suggest comparat…
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package goseq seems to be not available on the latest version of R
package goseq seems to be not available on the latest version of R
Print Differentially Expressed Exons From Dexseq Results
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Answer: limma Intercept vs No-intercept models completely changing DMR results?
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