Bioconductor Affy

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Bioconductor Install affy

updated 5 months ago by ATpoint ★ 4.1k • written 17 months ago by laujihen • 0

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Pathways probe affy Pathways probe affy

written 17.7 years ago by mike Ad. ▴ 30

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Annotation affy oligo ffpe Annotation affy oligo ffpe

written 10.3 years ago by Guest User ★ 13k

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multtest affy multtest affy

updated 8 months ago by Amruta • 0 • written 20.7 years ago by Bob ▴ 20

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1.2k

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affy affy

updated 9 weeks ago by Gordon Smyth 50k • written 19.0 years ago by SAURIN ★ 1.1k

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crlmm hapmapsnp6 genomewidesnp6Crlmm affy

updated 10 months ago by Kevin Blighe ★ 3.9k • written 10 months ago by Vincent J. Carey, Jr. 6.7k

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GEO affy

4 weeks ago • updated 25 days ago Kurtis • 0

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frmaTools affy

updated 10 weeks ago by James W. MacDonald 65k • written 11 weeks ago by michelafrancesconi8 • 0

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maplot_function rma_function ExpressionSet MicroarrayData affy

5 weeks ago Mj.A. • 0

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Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k

Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k

I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …

Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k

It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…

Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k

This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…

Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0

Thank you Tim, this is a great help in getting me started!

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Answer: limma Intercept vs No-intercept models completely changing DMR results?

Answer: CombineArrays for EPIC and EPIC V2

Answer: Too many significant genes when integrating gtex and tcga

Comment: Too many significant genes when integrating gtex and tcga

A: Print Differentially Expressed Exons From Dexseq Results

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