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affy
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0
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6
replies
2.2k
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Error when Installing BioConductor Package ('affy')
Bioconductor
Install
affy
updated 6 months ago by
ATpoint
★ 4.2k • written 18 months ago by
laujihen
• 0
0
votes
11
replies
2.1k
views
globaltest question
Pathways
probe
affy
Pathways
probe
affy
written 17.7 years ago by
mike Ad.
▴ 30
0
votes
5
replies
2.0k
views
Normalizing Affy Almac Xcel Array Data from CEL files
Annotation
affy
oligo
ffpe
Annotation
affy
oligo
ffpe
written 10.4 years ago by
Guest User
★ 13k
0
votes
2
replies
1.4k
views
Minimum expression threshold?
multtest
affy
multtest
affy
updated 9 months ago by
Amruta
• 0 • written 20.7 years ago by
Bob
▴ 20
0
votes
6
replies
1.3k
views
LIMMA : design (1, 2, 3, 3 ) , I got EXCITING results, what could be the logic, since i have 2 replicates for 3rd group only ?
affy
affy
updated 12 weeks ago by
Gordon Smyth
50k • written 19.1 years ago by
SAURIN
★ 1.1k
0
votes
1
reply
664
views
affy package and SNP arrays
crlmm
hapmapsnp6
genomewidesnp6Crlmm
affy
updated 11 months ago by
Kevin Blighe
★ 3.9k • written 11 months ago by
Vincent J. Carey, Jr.
6.7k
1
vote
10
replies
491
views
Obtaining pheno data from CEL files
GEO
affy
7 weeks ago • updated 6 weeks ago
Kurtis
• 0
1
vote
3
replies
391
views
frma normalization
frmaTools
affy
updated 3 months ago by
James W. MacDonald
66k • written 3 months ago by
michelafrancesconi8
• 0
1
vote
2
replies
248
views
Problem with maplot {affy} method when using rma {affy} method output as its input
maplot_function
rma_function
ExpressionSet
MicroarrayData
affy
8 weeks ago
Mj.A.
• 0
0
votes
1
reply
95
views
ERROR; return code from pthread_create() is 22
affy
updated 7 days ago by
James W. MacDonald
66k • written 9 days ago by
pickingastar
• 0
10 results • Page
1 of 1
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Replies
Comment: How to add Ensembl ids after Pseudobulk analysis by DESeq2
by
Guido Hooiveld
★ 4.0k
After checking `?DESeqDataSetFromMatrix` note this information: arguments provided to SummarizedExperiment including rowRanges and met…
Answer: Error in gseDO function
by
Guido Hooiveld
★ 4.0k
Yes, you are missing something. :-) For a GSEA you will need to use as input all genes that you are analyzing; these genes should be ran…
Comment: GSVA function
by
Robert Castelo
★ 3.3k
No, negative values may occur after log transformation when the `log(x)` is taken from a positive number `x with 0 < x < 1`, and therefore …
Comment: conumee with Infinium MethylationEPIC v2.0
by
sgomez
• 0
Hi Max, Could you try this? https://support.bioconductor.org/p/9136138/#9136840
Comment: Error in render R qmd document (could not find function "process")
by
ATpoint
★ 4.2k
This is not related to Bioconductor, and even if it was, please understand that without code one cannot debug these questions. The most obv…
Votes
A: Comparison between two different group's pathway analysis results
DiffBind Batch Effect
A: DiffBind Batch Effect
A: DiffBind Batch Effect
C: DiffBind Batch Effect
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★ 3.6k
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50k
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