Bioconductor Airway

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airway

updated 3.2 years ago by ATpoint ★ 4.7k • written 3.2 years ago by j.jacob1 • 0

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RNASeq DESeq2 airway

updated 3.3 years ago by Michael Love 43k • written 3.3 years ago by dmbergau • 0

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airway

5.0 years ago brest • 0

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RNAseqdataset airway deseq2 rangedsummarizedexperiment rnaseqgene

updated 7.0 years ago by mario.zanfardino ▴ 160 • written 7.0 years ago by ap3637 • 0

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airway

updated 8.1 years ago by Martin Morgan 25k • written 8.1 years ago by liyi983923 • 0

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airway

updated 9.4 years ago by Dan Tenenbaum ★ 8.2k • written 9.4 years ago by jmmonroykuhn • 0

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deseq2 airway

updated 9.6 years ago by Michael Love 43k • written 9.6 years ago by pcantalupo ▴ 10

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Comment: DiffBind custom normalization factor by Abbie • 0

Hello! Thanks so much for adding dba.normalize and all the documentation in the manual! I'm hoping I can ask a follow-up question here. I…

Answer: CpGs with genomic positions greater than the chromosome size in EPICv2? by James W. MacDonald 68k

All of the annotation packages provided by Bioconductor are simply repackaging of existing data from one or more sources. In this case, the…

Comment: Using TPM from tximport of Salmon output for singscore by Kent • 0

Thank you for the suggestions Michael. Would you say that after filtering out the low count genes, `rlog(counts, blind = T)` is doing the s…

Comment: Using TPM from tximport of Salmon output for singscore by Michael Love 43k

For clustering generally we recommend `vst()` see the workflow for example. For working with individual samples, I can see how a scaling/t…

Comment: DESeq2 model - How to test case/control time course model when taking account wi by Michael Love 43k

I'd recommend working with a local statistician or someone familiar with linear models in R. I have to reserve my time on the support site …

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clusterProfiler-GO enrichment Error

A: Machine learning in R book

Data preparation and Machine learning on time course RNAseq data

Answer: Use of org.Rn.eg.db with GRCr8 reference genome

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