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airway
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reset
1
vote
2
replies
3.5k
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airway package not compatible with R version 4.1.2 (2021-11-01)
airway
updated 3.8 years ago by
ATpoint
★ 5.0k • written 3.8 years ago by
j.jacob1
• 0
0
votes
1
reply
984
views
RNA-Seq Workflow Vignette - library(airway) Missing "quants" directory
RNASeq
DESeq2
airway
updated 3.9 years ago by
Michael Love
43k • written 3.9 years ago by
dmbergau
• 0
5
votes
8
replies
1.6k
views
Tibble error when installing bioconductor "airways"
airway
5.6 years ago
brest
• 0
0
votes
2
replies
1.8k
views
Is there a data package containing complex RNA-Seq data?
RNAseqdataset
airway
deseq2
rangedsummarizedexperiment
rnaseqgene
updated 7.7 years ago by
mario.zanfardino
▴ 160 • written 7.7 years ago by
ap3637
• 0
1
vote
5
replies
4.3k
views
installation of "airway" had non-zero exit status
airway
updated 8.8 years ago by
Martin Morgan
25k • written 8.8 years ago by
liyi983923
• 0
1
vote
3
replies
6.1k
views
package ‘airway’ is not available (for R version 3.2.2)
airway
updated 10.0 years ago by
Dan Tenenbaum
★ 8.2k • written 10.0 years ago by
jmmonroykuhn
• 0
0
votes
1
reply
1.3k
views
error in bioc2015rnaseq tutorial
deseq2
airway
updated 10.2 years ago by
Michael Love
43k • written 10.2 years ago by
pcantalupo
▴ 10
7 results • Page
1 of 1
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Comment: Ensembl 115 has been released!
by
eja.gsssssswwse.r.m
• 0
Keeping up with Ensembls latest release ensures access to cutting-edge genomic information. For those balancing research and leisure, a mob…
Answer: After running samtools, the featureCounts command crashed.
by
Kevin Blighe
★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot
by
Kevin Blighe
★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Answer: gene Set with high AUC score but no cells assigned to cell type
by
Kevin Blighe
★ 4.0k
Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
Answer: featureCounts -L: high unassigned:mapq fraction
by
Kevin Blighe
★ 4.0k
Hi Katarzyna, The discrepancy arises because your samtools stats were restricted to genic regions only, where alignments are typically o…
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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