Bioconductor Annotationhubdata

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1.6k

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tximeta AnnotationHub AnnotationHubData

2.3 years ago Thon • 0

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796

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exon AnnotationHubData

2.8 years ago mahima.g • 0

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1.9k

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GenomicFeatures AnnotationHubData tximeta

updated 3.4 years ago by Michael Love 43k • written 3.4 years ago by Pratik Mehta ▴ 10

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clusterProfiler AnnotationHubData GO

updated 3.7 years ago by Guido Hooiveld ★ 4.1k • written 3.8 years ago by Lucía ▴ 30

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1.7k

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AnnotationHubData PhyloProfile

3.8 years ago S.t ▴ 10

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4.5k

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AnnotationHubData AnnotationForge

3.8 years ago Saber_J ▴ 10

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994

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AnnotationHubData

updated 5.2 years ago by Kevin Blighe ★ 4.0k • written 5.2 years ago by Bogdan ▴ 670

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Comment: Which preprocessing steps are needed before running limpa? by miro165sabo • 0

Hi @gordonsmyth, thank you a lot for very fast and valuable response. I edited the question to provide more details.

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ? by Gordon Smyth 53k

I tend to use dpcCN(), because it more robust than dpc() to experiments with lots of samples and big differences between samples. You coul…

Answer: Which preprocessing steps are needed before running limpa? by Gordon Smyth 53k

Please see the example limpa analyses given at <http://github.com/smythlab/limpa>, especially the kidney cancer case study. limpa does not…

Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Korneel • 0

Thanks for the quick reply! If I understand correctly, I think if I keep track of the full lineage, I shouldn't have any risk of collapsin…

Comment: Pathway abundance data from Curatedmetagenomics by yesquokkan • 0

Hello, I was also wondering about the same issue. Did you figure it out?

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Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

Answer: Which preprocessing steps are needed before running limpa?

Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ?

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Scholar to Gordon Smyth 53k

Popular Question to Peter Hickey ▴ 760