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annotationhubdata
•
reset
0
votes
0
replies
75
views
Getting the exon co-ordinates and location
exon
AnnotationHubData
28 days ago
mahima.g
• 0
0
votes
2
replies
425
views
How to fix warning in makeTxDbFromGFF() when using Gencode M30 (mouse)?
GenomicFeatures
AnnotationHubData
tximeta
updated 8 months ago by
Michael Love
40k • written 8 months ago by
Pratik Mehta
▴ 10
0
votes
13
replies
1.5k
views
EnrichGO not working with db created from annotationhub
clusterProfiler
AnnotationHubData
GO
updated 12 months ago by
Guido Hooiveld
★ 3.6k • written 12 months ago by
Lucía
▴ 10
3
votes
3
replies
489
views
I can't run PhyloProfile
AnnotationHubData
PhyloProfile
12 months ago
S.t
▴ 10
3
votes
8
replies
1.3k
views
AnnotationForge::makeOrgPackage GO Ids mistake
AnnotationHubData
AnnotationForge
13 months ago
Saber_J
▴ 10
0
votes
1
reply
433
views
a BioC/R package that display the genome sequence/ mRNA exons/protein domains
AnnotationHubData
updated 2.5 years ago by
Kevin Blighe
3.8k • written 2.5 years ago by
Bogdan
▴ 660
6 results • Page
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Comment: Question on constructing design matrix and defining contrasts for analysis
by
mohammedtoufiq91
▴ 10
Sure, noted.
Comment: Question on constructing design matrix and defining contrasts for analysis
by
mohammedtoufiq91
▴ 10
@gordonsmyth Yes, I realized while re-running through the WGCNA workflow and forget to account for the paired experiment. For general gene …
Comment: Question on constructing design matrix and defining contrasts for analysis
by
Gordon Smyth
47k
PS. Just as aside, using `dput` to show a data.frame is unnecessary overkill. Just typing `targetsframe` at the prompt would do the job.
Comment: Question on constructing design matrix and defining contrasts for analysis
by
Gordon Smyth
47k
> Basically, I want to create a design matrix and binarize by 0 and 1 to be used in WGCNA analysis to compare module between/within groups …
Comment: SummarizedExperiment is now warning on attach about `read_block` namespace confl
by
ansleyharralson
• 0
Any estimate on when DelayedArray 0.26.3 will be released for macOS Binary (arm64)? Latest is still 0.26.02 best I can tell.
Votes
WGCNA coupled with differential expression analysis: question about baseline module detection
WGCNA with paired samples
Comment: Question on constructing design matrix and defining contrasts for analysis
Comment: Question on constructing design matrix and defining contrasts for analysis
Answer: Question on constructing design matrix and defining contrasts for analysis
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