Bioconductor Annotationhubdata

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exon AnnotationHubData

28 days ago mahima.g • 0

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425

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GenomicFeatures AnnotationHubData tximeta

updated 8 months ago by Michael Love 40k • written 8 months ago by Pratik Mehta ▴ 10

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1.5k

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clusterProfiler AnnotationHubData GO

updated 12 months ago by Guido Hooiveld ★ 3.6k • written 12 months ago by Lucía ▴ 10

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489

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AnnotationHubData PhyloProfile

12 months ago S.t ▴ 10

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1.3k

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AnnotationHubData AnnotationForge

13 months ago Saber_J ▴ 10

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433

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AnnotationHubData

updated 2.5 years ago by Kevin Blighe 3.8k • written 2.5 years ago by Bogdan ▴ 660

6 results • Page 1 of 1

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Comment: Question on constructing design matrix and defining contrasts for analysis by mohammedtoufiq91 ▴ 10

Sure, noted.

Comment: Question on constructing design matrix and defining contrasts for analysis by mohammedtoufiq91 ▴ 10

@gordonsmyth Yes, I realized while re-running through the WGCNA workflow and forget to account for the paired experiment. For general gene …

Comment: Question on constructing design matrix and defining contrasts for analysis by Gordon Smyth 47k

PS. Just as aside, using `dput` to show a data.frame is unnecessary overkill. Just typing `targetsframe` at the prompt would do the job.

Comment: Question on constructing design matrix and defining contrasts for analysis by Gordon Smyth 47k

> Basically, I want to create a design matrix and binarize by 0 and 1 to be used in WGCNA analysis to compare module between/within groups …

Comment: SummarizedExperiment is now warning on attach about `read_block` namespace confl by ansleyharralson • 0

Any estimate on when DelayedArray 0.26.3 will be released for macOS Binary (arm64)? Latest is still 0.26.02 best I can tell.

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WGCNA coupled with differential expression analysis: question about baseline module detection

WGCNA with paired samples

Comment: Question on constructing design matrix and defining contrasts for analysis

Answer: Question on constructing design matrix and defining contrasts for analysis

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Teacher to James W. MacDonald 63k