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ape
•
reset
0
votes
2
replies
717
views
ape::dnds produces nan value
R
ape
dnds
nan
nanotubes
17 months ago
Working
• 0
0
votes
1
reply
1.1k
views
Difficulty with msaConvert function in R package
ape
msa
updated 2.1 years ago by
UBod
▴ 290 • written 2.4 years ago by
João Tadeu
• 0
0
votes
1
reply
1.1k
views
Issues while downloading supraHex package in Linux
supraHex
nlme
hexbin
ape
updated 6.6 years ago by
Martin Morgan
25k • written 6.6 years ago by
agneet257
• 0
0
votes
0
replies
1.3k
views
Phylogenetic tree from marker genes
ape
phyloseq
dist
metagenomics
7.0 years ago
David
▴ 860
0
votes
1
reply
3.7k
views
ape - delete bootstrap values (node.labels) less than a certain value
ape
bootstrap
node
phylogenetic
tree
8.9 years ago
wd
▴ 30
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Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ian D.
▴ 70
Nudging my question. I could do with confirmation before proceeding with my current projects. Thank you.
Comment: Extremely small p-values using Limma for proteomic data
by
Robert Castelo
★ 3.3k
From the point of view of visualization, I find handy the fact that raw p-values give more resolution than adjusted ones, which allows one …
Comment: deseq2 results
by
ATpoint
★ 4.1k
> the results are not satisfactory to me Well, what is your question? The DESeq2 vignette covers how to do analysis, and some diagnostics…
Comment: Extremely small p-values using Limma for proteomic data
by
ATpoint
★ 4.1k
It's not an implementation problem I am discussing (it's trivial obviously) -- more that for most purposes the y-axis metric should be the …
Comment: Extremely small p-values using Limma for proteomic data
by
Robert Castelo
★ 3.3k
For visualization purposes you can draw an horizontal line at the p-value cutoff that meets the experiment-wide FDR cutoff. For instance, i…
Votes
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: minfi latest update for EPIC V2 chip
A: Error in DESeqDataSet : some values in assay are not integers
Answer: Cannot connect to ExperimentHub server
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Robert Castelo
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