Showing : arrayquality • reset
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arrayQuality: error from maQualityPlots
arrayQuality
updated 9.7 years ago by 52k • written 17.8 years ago by ▴ 60
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maQualityPlots: cannot coerce type 'S4' to vector of type
arrayQuality arrayQualityMetrics arrayQuality arrayQualityMetrics
10.9 years ago Agnes Paquet ▴ 30
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maQualityPlots: cannot coerce type 'S4' to vector of type 'double'
arrayQuality arrayQuality
10.9 years ago Saket Choudhary ▴ 130
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arrayQuality - maQualityPlots - Error: duplicate switch defaults: 'list(dev =...' and ''
arrayQuality arrayQuality
updated 13.3 years ago by 25k • written 13.3 years ago by ▴ 20
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arrayQuality - maQualityPlots - Error: duplicate switch defaults: 'list(dev =...' and ''
arrayQuality arrayQuality
13.6 years ago Fabio Liberante ▴ 20
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1.4k
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Error using arrayQuality and Agilent txt files
arrayQuality arrayQuality
14.2 years ago F. Javier López ▴ 30
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ArrayQuality package bug in agQuality function - marray package
Microarray arrayQuality Microarray arrayQuality
16.4 years ago Marcus Davy ▴ 680
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problem with arrayQuality in OSX 10.5
arrayQuality arrayQuality
updated 16.8 years ago by ▴ 130 • written 16.8 years ago by ▴ 50
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Agilent CGH data
CGH arrayQuality marray CGH arrayQuality marray
updated 17.3 years ago by 21k • written 17.3 years ago by ▴ 230
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hexbin package installation probs
hexbin arrayQuality hexbin arrayQuality
updated 17.3 years ago by 67k • written 17.3 years ago by ▴ 230
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marray and limma error with lmFit
Microarray Biobase DynDoc widgetTools limma arrayQuality marray convert Microarray DynDoc
17.7 years ago Paquet, Agnes ▴ 500
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I would like to know how to run PRvQCHyb in arrayQuality
arrayQuality arrayQuality
17.8 years ago Wonjong Moon ▴ 80
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3
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1.5k
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maQualityPlots on Mac
GUI arrayQuality marray GUI arrayQuality marray
updated 18.3 years ago by ▴ 300 • written 18.3 years ago by 16k
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MEEBO-tool in arrayQuality
GO arrayQuality GO arrayQuality
18.7 years ago Paquet, Agnes ▴ 500
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bugs in arrayQuality and marray
Normalization Biobase hexbin arrayQuality marray Normalization Biobase hexbin arrayQuality
19.1 years ago Paquet, Agnes ▴ 500
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RE: maQualityPlots (qpHexbin) question
hexbin arrayQuality hexbin arrayQuality
19.6 years ago Paquet, Agnes ▴ 500
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976
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maQualityPlots (qpHexbin) question
hexbin arrayQuality hexbin arrayQuality
19.6 years ago Rob J Goedman ▴ 40
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878
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arrayQuality: Error: recursive default argument reference
arrayQuality arrayQuality
19.7 years ago vijayaraj nagarajan ▴ 80
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1.3k
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problem using arrayQuality package
Normalization limma arrayQuality Normalization limma arrayQuality
updated 19.9 years ago by ▴ 500 • written 19.9 years ago by ▴ 510
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1.2k
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Error message when running arrayQuality 1.0.9
arrayQuality marray arrayQuality marray
updated 20.0 years ago by ▴ 500 • written 20.0 years ago by ▴ 10
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4
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1.7k
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issue in arrayQuality package
hexbin arrayQuality hexbin arrayQuality
20.0 years ago Longsi Ran ▴ 30
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983
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can't get release hexbin source package
GO hexbin arrayQuality GO hexbin arrayQuality
20.1 years ago Darlene Goldstein ▴ 230
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1.0k
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Questions on arrayQuality
Cancer arrayQuality Cancer arrayQuality
updated 20.5 years ago by ▴ 500 • written 20.5 years ago by ★ 2.0k
23 results • Page 1 of 1
Recent ...
Replies
Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0
Thanks for your reply!
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
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