Bioconductor Arrays

Showing : arrays • reset

votes

replies

1.1k

views

illuminaHumanv3.db arrays

2.8 years ago DH • 0

vote

1.1k

views

limma arrays genefilter

updated 3.7 years ago by James W. MacDonald 68k • written 3.7 years ago by jacorvar ▴ 40

votes

replies

2.7k

views

Microarray arrays limma MicroarrayData

updated 4.7 years ago by Gordon Smyth 53k • written 4.8 years ago by Emma • 0

vote

2.3k

views

limma Microarray MicroarrayData arrays

updated 4.8 years ago by Kevin Blighe ★ 4.0k • written 4.8 years ago by Emma • 0

votes

replies

1.7k

views

ArrayExpress limma arrays

4.8 years ago RMP87 • 0

votes

replies

3.2k

views

minfiDataEPIC arrays limma minfi Epigenetics

updated 5.3 years ago by Gordon Smyth 53k • written 5.3 years ago by Jeff ▴ 20

votes

replies

4.0k

views

array R rhdf5 arrays h5

updated 11.1 years ago by Nathaniel Hayden ▴ 180 • written 11.1 years ago by FabioF • 0

7 results • Page 1 of 1

Recent ...

Replies

Answer: specifying refColumn in calcNormFactors() by Gordon Smyth 53k

Your question is about cross-validation rather than specifically about edgeR. A general principle of cross-validation is that you must norm…

Answer: Sex prediction in sesame for EPICV2 by Tim Peters ▴ 230

Hi Pooja, There is a tutorial for preprocessing EPICv2 via sesame here: https://clark-lab.github.io/EPICv2_tutorial/. There is no call t…

Comment: Convergence Issues and Model Selection DESeq2 by dani.guan.3 • 0

Thank you, I appreciate your time and help.

Comment: Convergence Issues and Model Selection DESeq2 by Michael Love 43k

> out of my 30,229 genes, 795 (2.6%) are better explained ... Not exactly. Frequentist statistics is not symmetric in this way. If it were…

Answer: Is it still possible to do batch correction for my data? by James W. MacDonald 68k

The balance doesn't matter. What does matter is that you have samples nested in batch, in which case you cannot reliably distinguish techni…

Votes

A: decideTests() options in LIMMA

A: Removing cell cycle genes in large data set integration

Answer: Quick two questions on limpa

Awards • All

Teacher to Gordon Smyth 53k

Popular Question to poojitha.stemcell ▴ 10

Popular Question to James W. MacDonald 68k