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arrays
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6
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rhdf5 package and arrays in R
array
R
rhdf5
arrays
h5
updated 9.3 years ago by
Nathaniel Hayden
▴ 180 • written 9.3 years ago by
FabioF
• 0
0
votes
2
replies
1.8k
views
Beyond dmpFinder for methylation analysis, using limma for covariates
minfiDataEPIC
arrays
limma
minfi
Epigenetics
updated 3.5 years ago by
Gordon Smyth
50k • written 3.5 years ago by
Jeff
▴ 20
3
votes
5
replies
1.6k
views
Use of arrayWeights with two treatment groups
Microarray
arrays
limma
MicroarrayData
updated 2.9 years ago by
Gordon Smyth
50k • written 2.9 years ago by
Emma
• 0
2
votes
2
replies
1.0k
views
limma - removing samples?
ArrayExpress
limma
arrays
3.0 years ago
RMP87
• 0
1
vote
1
reply
675
views
Weight Array Quality before of after applying variance filtering?
limma
arrays
genefilter
updated 22 months ago by
James W. MacDonald
65k • written 22 months ago by
jacorvar
▴ 40
1
vote
1
reply
1.3k
views
How do I adjust for other factors in Limma differential expression analysis?
limma
Microarray
MicroarrayData
arrays
updated 3.0 years ago by
Kevin Blighe
★ 3.9k • written 3.0 years ago by
Emma
• 0
0
votes
0
replies
380
views
Illumina global SNP screeing array
illuminaHumanv3.db
arrays
11 months ago
DH
• 0
7 results • Page
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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
Thank you, Michael. I used the script shared by you. The genomic distribution of the original and null loci looks like non-stationary. Plea…
Comment: ChAMP installation issue
by
shepherl
3.9k
Without showing the commands you tried and the full output including error it is impossible to help. Please provide additional information…
Answer: Gene set enrichment analysis
by
Guido Hooiveld
★ 3.9k
No, that is not possible. The idea of gene set enrichment analysis (GSEA) is that it checks which gene sets (pathways, GO categories) are e…
Comment: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
by
zzrammal
• 0
thank you for your response. The problem is resolved. When i did a fit for the linear model i put NULL for the design fit <- lmFit(count_…
Comment: More regions in union when increasing DBA$config$mergeOverlap
by
Ziliang
• 0
I am so confused and frustrated learning to use this software. Isn't how you merge the peaksets one of the most important steps for the com…
Votes
A: DEXSeq time course design
using variable in design formula
differential expression for Single-cell RNAseq data using edgeR
Why p value inconsistent when using different number of pathway score?
Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu
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