Bioconductor Aucell

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AUCell

written 5 months ago by jasperwong_123 • 0

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AUCell AUcell

2.2 years ago • updated 2.1 years ago Lucy ▴ 60

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AUCell

updated 2.9 years ago by ATpoint ★ 4.9k • written 2.9 years ago by Lucy ▴ 60

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RcisTarget aucell SCENIC

updated 7.2 years ago by Martin Morgan 25k • written 7.2 years ago by jka8119 ▴ 10

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AUCell SCENIC

updated 7.3 years ago by sara.aibar ▴ 10 • written 7.3 years ago by Xingyu • 0

5 results • Page 1 of 1

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Comment: Merge multiple genomic intervals if overlapping more than xx percents by Lime • 0

I think this site is very useful if you are doing similar work (genomic intervals, peaks, ChIP-seq, etc.) because: There is sample code tha…

Comment: How to do simple Fisher' exact test for overlapped genomic interval in R? by Mina • 0

If I were you, I would do the following to make sure: Collect the overlapping regions into two BED files or two datasets. Use bedtools merg…

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by abaed • 0

Apologies for not clarifying earlier, you're right: it is a PCA, not an MDS. In local machine, computing the MDS takes quite a long time, P…

Answer: replace cat with message in glmTreat when lfc = 0 by Gordon Smyth 53k

Yes, I agree that the message should be a `message` rather than `cat` output, and the message is perhaps not needed at all, because anyone …

Comment: Guidance on limma for pseudobulk scRNA-seq with multi-factor design by Gordon Smyth 53k

How did you make this plot? I've never seen an MDS plot from limma/edgeR with axis scale going from -200 to 200. Personally, I would go ah…