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aucell
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gene Set with high AUC score but no cells assigned to cell type
AUCell
14 days ago
gogeni5529
• 0
0
votes
1
reply
512
views
Intepretation of results
AUCell
written 6 months ago by
jasperwong_123
• 0
2
votes
3
replies
1.8k
views
Applicability of AUCell to bulk RNA-seq
AUCell
AUcell
2.2 years ago • updated 2.1 years ago
Lucy
▴ 60
3
votes
1
reply
968
views
Should I set a seed prior to running AUCell?
AUCell
updated 3.0 years ago by
ATpoint
★ 5.0k • written 3.0 years ago by
Lucy
▴ 60
1
vote
5
replies
2.3k
views
RcisTarget error with multicore processing
RcisTarget
aucell
SCENIC
updated 7.3 years ago by
Martin Morgan
25k • written 7.3 years ago by
jka8119
▴ 10
2
votes
4
replies
1.9k
views
Cannot install AUCell 1.2.2
AUCell
SCENIC
updated 7.4 years ago by
sara.aibar
▴ 10 • written 7.4 years ago by
Xingyu
• 0
6 results • Page
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Comment: Check removeBatchEffect effectiveness
by
massimo
• 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package
by
ksankaran
• 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
by
ATpoint
★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes
by
ATpoint
★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
Comment: R course in Boston December 19-20
by
eja.gaasa2e.r.m
• 0
The upcoming XLSolutions R course in Boston on December 19 20 is a great opportunity to enhance your data skills. Whether you re a beginner…
Votes
Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Comment: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
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