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BASiCS single-cell bayesian differential expression

updated 5.3 years ago by CataVallejos ▴ 10 • written 5.3 years ago by muad.abdelhay ▴ 10

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BASiCS bayesian single cell scrnaseq

updated 5.3 years ago by CataVallejos ▴ 10 • written 5.3 years ago by alexandriapinto1 ▴ 10

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Comment: Use with_go along with other filters in getBM function by RuBBiT0 ▴ 10

Thank you! I think that makes much sense to me.

Comment: Interpret plot from DiffBind by Rory Stark ★ 4.9k

Not necessarily. It look to me like there is reconfiguring going on, with some chromatin that was open in the control becoming closed (the …

Comment: Interpret plot from DiffBind by Chris • 0

Thanks Rory! So that means the diseased sample has chromatin more open then the control one, is that correct?

Answer: List of Deprecated Packages for Bioc3.17 by shepherl 3.5k

lfa and gcatest have been reinstated.

Comment: Remove duplicate genera in DEseq output? by Lluís Revilla Sancho ▴ 710

How is your data before calculating the deg_DESeq? I see you use `phyloseq_to_deseq2` which should work well, but have you double checked t…

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Comment: Interpret plot from DiffBind

Answer: Use with_go along with other filters in getBM function

Answer: Interpret plot from DiffBind

A: Generating a proper TxDb instance from NCBI GFF Annotations File

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