Bioconductor BetaPrior

Showing : betaPrior • reset

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1.9k

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deseq2 lfc betaprior

updated 2.1 years ago by Michael Love 42k • written 6.0 years ago by Mariaxi • 0

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2.3k

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deseq2 lfcshrink betaprior

updated 6.3 years ago by Michael Love 42k • written 6.3 years ago by mat.lesche ▴ 110

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1.2k

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deseq2 interaction term multiple groups betaprior

updated 6.6 years ago by Michael Love 42k • written 6.6 years ago by tarun2 • 0

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4.3k

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deseq2 betaPrior shrinkage significance

6.6 years ago brynedal ▴ 40

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1.4k

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deseq2 LRT betaprior

updated 8.2 years ago by Michael Love 42k • written 8.2 years ago by laianavarromartin ▴ 20

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1.5k

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deseq2 betaprior

updated 8.2 years ago by thomas.siegmund • 0 • written 8.2 years ago by akaever ▴ 30

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Answer: ANOVA like approach of edgeR by Gordon Smyth 51k

You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…

Answer: Create Illmina bead summary data by Gordon Smyth 51k

GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…

Comment: Help with RSEM counts: do I transpose matrix? by NB • 0

OK thank you.

Comment: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k

You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.

Comment: Help with RSEM counts: do I transpose matrix? by NB • 0

Thank you. If I have questions about QC/normalization, do I ask them here or ask a new question?

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Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification

Answer: ANOVA like approach of edgeR

Comment: ANOVA like approach of edgeR

Answer: Detecting genomic signatures of drug resistance breast cancer in transcriptom

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