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Showing :
biocfilecache
•
reset
6
votes
12
replies
4.7k
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BiocFileCache/ExperimentHub/AnnotationHub temporary ERROR
BiocFileCache
AnnotationHub
ExperimentHub
6 months ago • updated 4 days ago
shepherl
3.8k
3
votes
6
replies
1.3k
views
Caching bam index files using BiocFileCache
BiocFileCache
23 months ago • updated 18 months ago
kent.riemondy
▴ 20
2
votes
8
replies
2.4k
views
biomaRt : No lock file for BiocFileCache
BiocFileCache
biomaRt
updated 2.0 years ago by
Martin Morgan
25k • written 2.0 years ago by
ZheFrench
▴ 50
0
votes
1
reply
638
views
Importing more than 100,000 at once into BiocFileCache
BiocFileCache
updated 2.6 years ago by
Mike Smith
★ 6.5k • written 2.6 years ago by
pierrick.roger
• 0
0
votes
2
replies
1.3k
views
Failure to save txDb using saveDb in BiocFileCache location other than /tmp
tximeta
BiocFileCache
updated 3.0 years ago by
Michael Love
41k • written 3.0 years ago by
judith.risse
• 0
0
votes
1
reply
1.1k
views
News:
Updates to BiocFileCache, AnnotationHub, and ExperimentHub
BiocFileCache
AnnotationHub
ExperimentHub
cache
3.1 years ago
shepherl
3.8k
0
votes
3
replies
693
views
How to keep remote file name by bfcadd in BiocFileCache?
BiocFileCache
updated 4.1 years ago by
shepherl
3.8k • written 4.1 years ago by
Qiang
▴ 80
7 results • Page
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Recent ...
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Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
by
ATpoint
★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
camp
▴ 10
Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
Votes
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
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