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BIOCON OSCA Bioconductor

8 months ago • updated 7 months ago zr • 0

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Bioconductor Biocon

8 months ago katja.danielzik • 0

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Bioconductor biocon limma

updated 19 months ago by Gordon Smyth 52k • written 19 months ago by ningyuan • 0

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Transcriptomics Bioconductor Statistics Job Biocon

4.2 years ago m.jackson • 0

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biocon code-of-conduct Bioconductor

updated 4.3 years ago by Lluís Revilla Sancho ▴ 760 • written 4.3 years ago by Laurent Gatto 1.6k

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Answer: DESeq2 Apeglm Coefficient Reordering / Log2FoldChange Comparison Change by James W. MacDonald 68k

Yes, you can simply flip the sign of the logFC to reverse the direction of the comparison.

Comment: Heatmap of a transformed deseq object with pheatmap by James W. MacDonald 68k

The argument for annotation_col is meant to be a `data.frame`, not a vector. The hint in the error is that it has the wrong number of dimen…

Comment: Heatmap of a transformed deseq object with pheatmap by caroline.zanchi • 0

I used this argument in the second paragraph of code forthe heatmap, this is wehre I got the message Error in `[.default`(annotation_col, c…

Answer: Heatmap of a transformed deseq object with pheatmap by James W. MacDonald 68k

Ah, yes. The non-ASCII character error. My favorite! Please note that `pheatmap` is not a Bioconductor package, so you should be asking …

Comment: Heatmap of a transformed deseq object with pheatmap by caroline.zanchi • 0

It is in ! It just took longer than planned :) ... aaaand now that I added the heatmap in I realize lits of genes really do not look like t…

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Comment: How to load scRNA-seq data from GEO

limma correction for tumor purity

Answer: limma correction for tumor purity

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