Showing : Statistics • reset
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186
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FPKM t-test vs DEseq2
DESeq2 statistics rna-seq
updated 7 weeks ago by ★ 2.9k • written 7 weeks ago by • 0
0
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3
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262
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batch effect in EPIC array data
statistics Epigenetics R
updated 3 months ago by ▴ 710 • written 3 months ago by ▴ 10
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0
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188
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Job: PhD position in Bioinformatics in Jena
Statistics ComputationalBiology Aging MachineLearning
4 months ago alena.vanboemmel • 0
0
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2
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251
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Results analysis of differential gene expression using DESeq2 package
RnaSeqSampleSize statistics DESeq2
updated 5 months ago by ★ 1.2k • written 5 months ago by • 0
1
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0
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278
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Statistical test for genomic annotation by ChIPseeker
statistics PeakAnnotation ChIPseeker GuangchuangYu
10 months ago arisarkar88 ▴ 40
1
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0
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335
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Job: Lecturer in Statistics - School of Mathematics and Statistics - University of St Andrews
computational teaching statistics research
10 months ago Andy Lynch ▴ 120
1
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0
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306
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Job: Research Fellow in Prostate Cancer Proteomics (Bioinformatics/Stats/Data Analysis) - University of St Andrews
Multiomics Proteomics Cancer Statistics Bioinformatics
10 months ago Andy Lynch ▴ 120
0
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6
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671
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regression analysis for epic array methylation data using limma
limma Epigenetics STATISTICS R
12 months ago Jitendra ▴ 10
0
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3
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987
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Reading large file (15GB) in R
R Rstudio Bioconducter statistics
updated 15 months ago by 21k • written 16 months ago by ▴ 10
3
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5
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1.0k
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P adjusted values in Deseq2
DESeq2 Statistics
written 2.4 years ago by • 0
0
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2
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592
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News: Ascona Workshop “Biological systems: from first principles to data-​driven modelling and back” 27. 3. - 1. 4. 2022
theory modeling statistics ascona Workshop
19 months ago • updated 4 months ago Wolfgang Huber 13k
0
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0
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589
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Job: Biostatistics/Bioinformatics Research Scientist at UNC Charlotte
singlecellRNA-Seq pathview statistics R
2.2 years ago • updated 2.1 years ago Luo Weijun ★ 1.6k
0
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0
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640
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Job: Bioinformatician at MiroBio, Oxford, UK
Transcriptomics Bioconductor Statistics Job Biocon
2.3 years ago m.jackson • 0
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0
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588
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Job: Scientist/Senior Scientist, Statistical Geneticist
Sequencing Genetics GeneticsPed statistics
2.4 years ago António Miguel de Jesus Domingues ▴ 490
0
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0
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711
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Job: Proteomics Bioinformatician
JobPosting Proteomics Statistics Job
2.5 years ago Laura • 0
0
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0
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570
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Job: Biostatistics/Bioinformatics Research Scientist at UNC Charlotte
R statistics pathview singlecellRNA-Seq
2.5 years ago • updated 2.2 years ago Luo Weijun ★ 1.6k
1
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2
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613
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Re-calculation of Padj (P adjusted value)
statistics Benjamini–Hochberg procedure deseq2
updated 2.7 years ago by 40k • written 2.7 years ago by ▴ 50
2
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0
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587
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Job: Multiple open positions in biomedical statistics at Eurac Research, Italy
epidemiology statistics bioinformatics Job
2.7 years ago Johannes Rainer ★ 2.0k
0
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0
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494
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Job: Two Bioinformatics Fellowship Positions at US EPA
bioinformatics toxicology Job sequenicng statistics
2.9 years ago • updated 2.6 years ago whduke • 0
0
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0
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1.6k
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Job: Postdoc and PhD student in Bioinformatics/Biostatistics
genomics NGS R genetics statistics
4.9 years ago • updated 2.5 years ago Luo Weijun ★ 1.6k
1
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0
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542
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Job: Post-Doctoral Research Fellow, Cancer Genomics
genomics seattle bioinformatics data science statistics Job
3.0 years ago Fred Hutch (Recruiting) ▴ 40
3
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0
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1.9k
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Job: Postdoctoral Scientist, Statistical Bioinformatics and Proteomics, WEHI Australia
job proteomics Job statistics
3.6 years ago • updated 3.4 years ago Gordon Smyth 47k
0
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0
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1.1k
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Job: Postdoc and PhD student in Bioinformatics/Biostatistics
NGS R statistics genomics big data Job
4.3 years ago • updated 3.5 years ago Luo Weijun ★ 1.6k
0
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1
reply
411
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How to handle batch effect and interaction with experimental variables
deseq2 statistics differential expression
3.6 years ago A • 0
0
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1
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467
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Exclude interaction terms from the design
deseq2 statistics modelling
updated 3.6 years ago by 40k • written 3.6 years ago by • 0
2
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2
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1.7k
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How adjusted p-values are calculated in limma
limma r transcriptomics FDR statistics
updated 3.7 years ago by 47k • written 3.7 years ago by ▴ 10
0
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0
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663
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Proteomics data analysis with DEP no replicates
DEP Proteomics Statistics limma
3.8 years ago tatabox • 0
3
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3
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847
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Using alternative LFC shrinkage methods for computing p-values in DESeq2
deseq2 apeglm statistics
updated 4.0 years ago by 40k • written 4.0 years ago by • 0
0
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1
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652
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Efficient resampling in GENESIS or another Bioconductor GWAS package to obtain empirical p-values?
GENESIS GWAS resampling resample statistics
4.3 years ago naglemi ▴ 10
0
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0
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508
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package for mismatch distribution?
genetics statistics
4.4 years ago myriam.croze07 • 0
1
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6
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2.0k
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DESeq2 unbalanced sample size
deseq2 bioconductor bioinformatics statistics
updated 3 months ago by 40k • written 4.5 years ago by • 0
1
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2
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653
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Newbie to all of this
bioconductor statistics
4.6 years ago sportwoo • 0
8
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8
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5.1k
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Voom transformation from counts and normalization to negative values
rnaseq voom limma tcga statistics
updated 4.7 years ago by 7.8k • written 4.7 years ago by ▴ 50
1
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2
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656
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What to do with microarray probes that catch multiple genes?
affymetrix microarrays microarray probe statistics
updated 4.8 years ago by 63k • written 4.8 years ago by • 0
1
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4
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907
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Do the gene set statistics of the ROAST paper correspond to those implemented in the .roastEffects R function?
limma roast statistics source code gene set testing
4.8 years ago Andrea Carenzo • 0
0
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2
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757
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comparing two GOstats result lists
gostats statistics
updated 5.0 years ago by 63k • written 5.0 years ago by ▴ 20
1
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0
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842
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Job: Statistical Research Associate
biostatistics statistics sas git assay Job
5.1 years ago Fred Hutch (Recruiting) ▴ 40
0
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0
replies
809
views
DSS DMLTest Prior Estimate of theta dispersion
DSS dmltest bayesian statistics methylation
5.2 years ago floriandeckert ▴ 30
0
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0
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826
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News: SCANGEN: Single-cell cancer genomics workshop at ISMB 2018
single cell cancer genomics statistics News
5.2 years ago kieranrcampbell ▴ 50
0
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0
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776
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Two questions about pathifier package
pathways statistics microarray
5.4 years ago arronar • 0
24
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6
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8.1k
views
Effect of lfcThreshold on p-value in DESeq2
deseq2 rnaseq statistics
updated 5.7 years ago by 63k • written 5.7 years ago by ▴ 30
2
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4
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864
views
Removing batch effect on edgeR when interactons are looked at
rnaseq edger statistics model matrix
updated 5.7 years ago by 13k • written 5.7 years ago by ▴ 70
0
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0
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879
views
Assigning stats to differential peak locations relative to TSS
chipseeker chipseq statistics
5.7 years ago rbronste ▴ 60
0
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0
replies
1.2k
views
Job: Research Scientist in Biostatistics/Bioinformatics
statistics genetics genomics R Job
6.3 years ago • updated 6.2 years ago Luo Weijun ★ 1.6k
1
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2
replies
1.8k
views
how to perform pre ranked GSEA in R?
r microarray statistics GSEA
updated 6.2 years ago by • 0 • written 8.3 years ago by ▴ 80
0
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0
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974
views
Job: Bioinformaticist, Research Programmer
R genomics statistics Job
6.3 years ago radel • 0
1
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2
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2.4k
views
the statistical test that DESeq2 use
deseq2 statistics
updated 6.3 years ago by 7.8k • written 6.3 years ago by • 0
2
votes
2
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6.4k
views
edgeR: How is FDR calculated for logFC? (False Discovery Rate)
edgeR bioconductor fdr statistics differential gene expression
6.5 years ago jol.espinoz ▴ 40
1
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0
replies
1.3k
views
Job: PhD Positions in Computational Cancer Research
computational biology image analysis cancer genomics statistics Job
6.5 years ago Bernd Fischer ▴ 550
0
votes
0
replies
980
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Job: Seeking computational biologists with expertise in RNA-Seq and/or statistics at Immuneering Corporation, Cambridge MA and New York NY
rna-seq CNS Neurodegeneration statistics computational biology Job
6.6 years ago mmartin ▴ 20
50 results • Page 1 of 1
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Answer: multiple filters in biomaRt by RuBBiT0 ▴ 10
First, yes, one gene could be related to several GO ID, and the result is based on the annotation package you use. Second, could you pro…
Comment: Diffbind "No genome detected" by kyliecode • 0
Hi Dr. Stark, Thanks very much for your reply! The bam files were output from nf-core/chipseq pipeline and for some reason, they do not ha…
Answer: Discrepancy between DESeq2 files produced in Galaxy and R(RStudio) by Michael Love 40k
I guess that Galaxy may be using some kind of LFC shrinkage, but without seeing their code I wouldn't know for sure. Shrinkage generally…
Comment: TCGAbiolinks cannot find bcr_patient_barcode by Habil Zare ▴ 170
I checked your example with the devel version 2.29.6 on Bioc and it worked fine. Thanks for the fix!
Answer: error in ChAMP loading file by jenniferbrowngates • 0
I got a lot of information from this website about different topics which is beneficial for me too so I thank this site and also suggest a …
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Answer: Using PEER to identify hidden confounders in RNA-seq data (not working)
Comment: Error: biomaRt has encountered an unexpected server error.
Comment: Interpret plot from DiffBind
Comment: Interpret plot from DiffBind
Comment: Interpret plot from DiffBind
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