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biocupgrade
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reset
3
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8
replies
26k
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"Error in readRDS(file) : unknown input format" appearing every time starting Rstudio after BiocUpgrade
BiocUpgrade
Rstudio
Bioconductor
R3.2.2
8.5 years ago
svlachavas
▴ 830
8
votes
4
replies
6.9k
views
Can't upgrade to Bioconductor 3.3?
bioconductor
biocupgrade
upgrade
update
bioclite
8.0 years ago
enricoferrero
▴ 660
6
votes
2
replies
1.8k
views
BiocUpgrade without being promped to confirm
bioclite
biocinstaller
biocupgrade
updated 9.5 years ago by
Dan Tenenbaum
★ 8.2k • written 9.5 years ago by
Simon Coetzee
▴ 50
1
vote
4
replies
1.7k
views
Error in upgrading bioconductor
bioconductor
biocupgrade
updated 8.2 years ago by
Martin Morgan
25k • written 8.2 years ago by
laksharikrish
• 0
2
votes
1
reply
1.6k
views
Update bioconductor in R 3.2.4
GenomicRanges
biocupgrade
updated 8.1 years ago by
Dan Tenenbaum
★ 8.2k • written 8.1 years ago by
Vinicius Henrique da Silva
▴ 40
0
votes
2
replies
1.2k
views
BiocInstaller_1.16.5.zip not found when using biocLite("BiocUpgrade")
bioclite
biocupgrade
updated 8.0 years ago by
Martin Morgan
25k • written 8.0 years ago by
dan.gatti
• 0
0
votes
1
reply
1.2k
views
Upgrading bioconductor - how do I change the contrib.url?
biocinstaller
biocupgrade
updated 8.5 years ago by
James W. MacDonald
65k • written 8.5 years ago by
ail27
• 0
0
votes
1
reply
611
views
Older version is broken. How to remove it or update it?
Logolas
old-version
BiocUpgrade
updated 6.0 years ago by
James W. MacDonald
65k • written 6.0 years ago by
Kushal K Dey
▴ 10
8 results • Page
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Answer: SGSeq: moving toward diffex from SGSeq analysis
by
Leonard Goldstein
▴ 200
`vid` and `eid` are unique identifiers for splice variants and splicing events respectively. They are analogous to exon bin and gene identi…
Comment: Help with error using camera() in limma
by
Chris
• 0
Thanks James! I fixed the error. I try gene symbol instead of entrez and it worked.
Comment: limma for gene expression analysis with big and unbalanced sample size
by
XW
• 0
Could you explain more about the comment "there are no problems with using limma for unbalanced data sets" ? thanks.
Comment: Limma, eBayes different sample size of groups and adjustment
by
XW
• 0
Could you explain more about how the analysis self-correct the different sample sizes when calling DEGs in limma? Thanks
Answer: How do I select a GC file (gc.wig)? (How to determine the inputdata of HMMcopy)
by
James W. MacDonald
65k
The section of the vignette that is *directly above the one you quote* says that you can use the HMMcopy utils to do all three things. And …
Votes
Answer: Fold change calculation in Diffbind vs. DESEQ2?
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
C: Extremely big genes in annotation TxDb packages
Make custom Txdb class objects from Txdb
Comment: Help with error using camera() in limma
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