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biostrings
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DNAString: Standard checksum function?
Biostrings
FASTA
sequencing
8.2 years ago • updated 1 day ago
Henrik Bengtsson
★ 2.4k
2
votes
6
replies
777
views
Biostrings error at retrieving protein sequences
SequenceMatching
Biostrings
DifferentialExpression
Proteome
updated 7 months ago by
Hervé Pagès
16k • written 7 months ago by
nromerov
• 0
1
vote
5
replies
435
views
Biostrings: read*StringSet() functions leave open file handles
Biostrings
8 weeks ago • updated 7 weeks ago
Gerhard Thallinger
▴ 180
0
votes
1
reply
139
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Trimming a section of a scaffold from a genome
Biostrings
GenomeAssembly
updated 5 weeks ago by
James W. MacDonald
65k • written 5 weeks ago by
Karen
• 0
1
vote
3
replies
537
views
AAbin vs DNAbin structures
Biostrings
updated 8 months ago by
James W. MacDonald
65k • written 8 months ago by
rogerb
• 0
0
votes
3
replies
156
views
Store output of matchPWM()
biostrings
Biostrings
updated 5 days ago by
James W. MacDonald
65k • written 5 days ago by
mat149
▴ 70
0
votes
2
replies
709
views
Probe off-target prediction: Identifying short sequence matches - potentially with mismatches & indels - in a transcriptome
Microarray
Alignment
Biostrings
written 12 months ago by
sandmann.t
▴ 70
2
votes
2
replies
230
views
From a DNAStringSet to a data.frame
Biostrings
5 weeks ago
ramiro.barrantes
▴ 10
0
votes
0
replies
163
views
How to search for a string in a DNAStringSet dataset?
Biostrings
3 months ago
Angela Michalichyn
• 0
9 results • Page
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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …
Comment: Help with running egsea()
by
James W. MacDonald
65k
Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…
Comment: Help with running egsea()
by
Chris
• 0
Thanks James! I update the question. The last question mean when we use `buildIdx()`, could we use gene symbol instead of entrezID. However…
Comment: Help with running egsea()
by
James W. MacDonald
65k
I don't understand the last question, but do look at the msigdb.gsets argument to `buildIdx` in the help page for that function.
Votes
Comment: Help with running egsea()
Answer: Trim/Filter out-of-bounds GRanges
Comment: Help with running egsea()
Answer: How to save the DEXSeq results
Answer: How to save the DEXSeq results
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