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sce
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reset
2
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5
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5.2k
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Merging multiple single cell experiment objects from different samples
sce
SingleCellExperiment
merge
updated 21 months ago by
mollyab12
• 0 • written 2.6 years ago by
achoppe
▴ 10
1
vote
2
replies
2.2k
views
ident function in sce
SingleCellExperiment
cluster
identities
sce
updated 4.6 years ago by
Aaron Lun
★ 28k • written 4.6 years ago by
reinepapillon
• 0
0
votes
1
reply
1.6k
views
Clearer error messages in SingleCellExperiment cbind
singlecellexperiment
sce
scater
updated 4.6 years ago by
Aaron Lun
★ 28k • written 4.6 years ago by
bharris
• 0
2
votes
4
replies
2.9k
views
Quality control in SingleCellExperiment
SingleCellExperiment
scater
sce
quality control
updated 3.9 years ago by
1498554536
• 0 • written 4.7 years ago by
Linda
• 0
3
votes
3
replies
1.9k
views
Different number of marker genes between same clusters
sce
markers
single cell
DE
clusters
5.2 years ago
ludmi.b
• 0
4
votes
7
replies
5.3k
views
removing rows from SingleCellExperiment container
sce
singlecellexperiment
scRNAseq
subsetting
updated 5.9 years ago by
Aaron Lun
★ 28k • written 5.9 years ago by
TJ
• 0
1
vote
2
replies
1.1k
views
Inserting "Biotype" into scater SCE objects
scater
sce
biotype
R
updated 6.7 years ago by
Aaron Lun
★ 28k • written 6.7 years ago by
thebadpenny
• 0
0
votes
2
replies
1.2k
views
How to process ids containing "." in BiomaRt?
sce
biomart
annotation
updated 7.4 years ago by
Mike Smith
★ 6.6k • written 7.4 years ago by
linda.c.dansereau
• 0
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Comment: Running multiple KNN queries in parallel
by
SamGG
▴ 360
Thank you for your detailed answer, I appreciate it and your work.
Answer: Running multiple KNN queries in parallel
by
Aaron Lun
★ 28k
That is correct - you can't pass the prebuilt objects to different processes. Maybe `MulticoreParam()` might work on POSIX systems but I'm …
Answer: RSubread output significantly different from bash Subread output
by
Gordon Smyth
52k
The difference (as ATpoint has correctly pointed out) is that Rsubread::featureCounts counts multi-mapping reads by default whereas the com…
Answer: Deseq2 Error in solve.default(qr.R(qrx)) : 'a' (1 x 0) must be square
by
Michael Love
43k
I would check the rank of your model matrix, and perhaps meet with a local statistician who can help you create an appropriate design matri…
Comment: sva: get a sv for RIN scores
by
gabriel.hoffman
▴ 170
Agreed. I'll add that with small sample size, a covariate can explain some fraction of expression variation even under the null.
Votes
Answer: Running multiple KNN queries in parallel
Answer: Running multiple KNN queries in parallel
Answer: RSubread output significantly different from bash Subread output
Answer: RSubread output significantly different from bash Subread output
Answer: How to annotate a limma Elist raw class object with an annotation file
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