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sce
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reset
2
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5
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4.6k
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Merging multiple single cell experiment objects from different samples
sce
SingleCellExperiment
merge
updated 17 months ago by
mollyab12
• 0 • written 2.3 years ago by
achoppe
▴ 10
1
vote
2
replies
2.0k
views
ident function in sce
SingleCellExperiment
cluster
identities
sce
updated 4.2 years ago by
Aaron Lun
★ 28k • written 4.2 years ago by
reinepapillon
• 0
0
votes
1
reply
1.4k
views
Clearer error messages in SingleCellExperiment cbind
singlecellexperiment
sce
scater
updated 4.2 years ago by
Aaron Lun
★ 28k • written 4.2 years ago by
bharris
• 0
2
votes
4
replies
2.5k
views
Quality control in SingleCellExperiment
SingleCellExperiment
scater
sce
quality control
updated 3.5 years ago by
1498554536
• 0 • written 4.4 years ago by
Linda
• 0
3
votes
3
replies
1.6k
views
Different number of marker genes between same clusters
sce
markers
single cell
DE
clusters
4.8 years ago
ludmi.b
• 0
4
votes
7
replies
4.8k
views
removing rows from SingleCellExperiment container
sce
singlecellexperiment
scRNAseq
subsetting
updated 5.6 years ago by
Aaron Lun
★ 28k • written 5.6 years ago by
TJ
• 0
1
vote
2
replies
942
views
Inserting "Biotype" into scater SCE objects
scater
sce
biotype
R
updated 6.4 years ago by
Aaron Lun
★ 28k • written 6.4 years ago by
thebadpenny
• 0
0
votes
2
replies
1.1k
views
How to process ids containing "." in BiomaRt?
sce
biomart
annotation
updated 7.1 years ago by
Mike Smith
★ 6.5k • written 7.1 years ago by
linda.c.dansereau
• 0
8 results • Page
1 of 1
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Comment: 'path' must be string
by
James W. MacDonald
66k
Yes. We already knew that from the error message, and I told you that in my previous email. The point wasn't to figure out *where* the err…
Comment: 'path' must be string
by
cpierce2
• 0
I ran the debugger and this is the line that causes the error: ``` if (any(startsWith(pkcData[["RTS_ID"]][1L], "RTS")) & any(startsWith(pr…
Comment: Generating surrogate variables across multiple variables of interest
by
Robert
• 0
Yes, we have several biomarkers, and a proteomic set, so we are characterizing each biomarker by it's proteomic association(s). The use for…
Comment: Error running tximeta
by
Guido Hooiveld
★ 4.0k
FYI (since I just finalized a run with `salmon`). For each sample (`.`) an output folder is created that contains 3 files (`cmd_info.json`…
Comment: Error running tximeta
by
Michael Love
42k
Tximeta uses the full directory. There are files that give the key information about the transcriptome. It's not a good idea to selectively…
Votes
Question: Deconvolution Methods on RNA-Seq Data (Mixed cell types)
Answer: Understanding how to contrast two treatments in DESeq2
Answer: Understanding how to contrast two treatments in DESeq2
Cannot extract TxFeatures for a defined GRanges object
Limma time series spline help
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