Bioconductor Blocking

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1.0k

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voom blocking limma

updated 17 months ago by Gordon Smyth 52k • written 17 months ago by Gerhard Thallinger ▴ 180

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952

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edgeR blocking

updated 3.9 years ago by Yunshun Chen ▴ 900 • written 3.9 years ago by Molly • 0

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1.2k

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diffbind blocking model

updated 4.4 years ago by Rory Stark ★ 5.2k • written 5.4 years ago by melnuesch ▴ 10

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1.7k

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edger limma paired blocking ruvseq

updated 4.9 years ago by Gordon Smyth 52k • written 4.9 years ago by ScA • 0

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3.0k

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limma repeated measurements blocking random effects

updated 5.1 years ago by Gordon Smyth 52k • written 5.1 years ago by Jane ▴ 10

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4.2k

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limma edger blocking paired samples

updated 6.3 years ago by Gordon Smyth 52k • written 6.3 years ago by anou ▴ 10

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1.0k

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diffbind differential binding analysis blocking

updated 7.2 years ago by Rory Stark ★ 5.2k • written 7.2 years ago by zhangly811 • 0

7 results • Page 1 of 1

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Comment: DiffBind custom normalization factor by Abbie • 0

Hello! Thanks so much for adding dba.normalize and all the documentation in the manual! I'm hoping I can ask a follow-up question here. I…

Answer: CpGs with genomic positions greater than the chromosome size in EPICv2? by James W. MacDonald 68k

All of the annotation packages provided by Bioconductor are simply repackaging of existing data from one or more sources. In this case, the…

Comment: Using TPM from tximport of Salmon output for singscore by Kent • 0

Thank you for the suggestions Michael. Would you say that after filtering out the low count genes, `rlog(counts, blind = T)` is doing the s…

Comment: Using TPM from tximport of Salmon output for singscore by Michael Love 43k

For clustering generally we recommend `vst()` see the workflow for example. For working with individual samples, I can see how a scaling/t…

Comment: DESeq2 model - How to test case/control time course model when taking account wi by Michael Love 43k

I'd recommend working with a local statistician or someone familiar with linear models in R. I have to reserve my time on the support site …

Votes

clusterProfiler-GO enrichment Error

A: Machine learning in R book

Data preparation and Machine learning on time course RNAseq data

Answer: Use of org.Rn.eg.db with GRCr8 reference genome

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