Bioconductor Blocking

Showing : blocking • reset

votes

replies

1.3k

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voom blocking limma

updated 2.3 years ago by Gordon Smyth 53k • written 2.3 years ago by Gerhard Thallinger ▴ 180

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1.1k

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edgeR blocking

updated 4.7 years ago by Yunshun Chen ▴ 900 • written 4.7 years ago by Molly • 0

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1.5k

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diffbind blocking model

updated 5.2 years ago by Rory Stark ★ 5.2k • written 6.3 years ago by melnuesch ▴ 10

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2.1k

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edger limma paired blocking ruvseq

updated 5.7 years ago by Gordon Smyth 53k • written 5.7 years ago by ScA • 0

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3.7k

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limma repeated measurements blocking random effects

updated 5.9 years ago by Gordon Smyth 53k • written 5.9 years ago by Jane ▴ 10

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4.8k

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limma edger blocking paired samples

updated 7.2 years ago by Gordon Smyth 53k • written 7.2 years ago by anou ▴ 10

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1.2k

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diffbind differential binding analysis blocking

updated 8.0 years ago by Rory Stark ★ 5.2k • written 8.1 years ago by zhangly811 • 0

7 results • Page 1 of 1

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Comment: Are individual-mouse-based statistics possible in CellChat? by LillianaVolkman99 • 0

thank you very much. https://www.biostars.org/p/9617271/

Comment: Making a Full Rank Model for Allele-Specific Expression with DESeq2 by Gordon Smyth 53k

My apologies, I forgot that `design.group` is not included in the final matrix, because the baseline group effects are already captured by …

Answer: Bile acid analysis with limpa by Gordon Smyth 53k

I am not familiar with targeted HPLC-MS and I don't know what you mean by "peak areas". If it produces standard format mass spec data from …

Comment: How to convert .raw data for use in xcms by TikTsossa33ssalpc • 0

It sounds like your mzML conversion has a CV term that XCMS doesn t recognize, which often happens with newer vendor formats or outdated ms…

Comment: Boolean Gate Combination for Any 2 Positive Events in flowWorkspace by TikTsossa33ssalpc • 0

To calculate event numbers for boolean combinations in flow cytometry, you should use a logic gating tool or a script that processes popula…

Votes

A: DESeq2: Is it possible to convert read counts to expression values via TPM and r

A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen

Comment: limpa analysis advice

Answer: When to use edgeR or limma

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