Showing : blocking • reset
5
votes
3
replies
1.2k
views
limma: More differentially expressed genes when factor included in model than when used as blocking factor
voom blocking limma
updated 2.1 years ago by 53k • written 2.1 years ago by ▴ 180
1
vote
1
reply
1.1k
views
edgeR & blocking with complex experimental design
edgeR blocking
updated 4.5 years ago by ▴ 900 • written 4.5 years ago by • 0
0
votes
2
replies
1.3k
views
Diffbind with multiple blocking factors
diffbind blocking model
updated 5.0 years ago by ★ 5.2k • written 6.0 years ago by ▴ 10
2
votes
6
replies
2.0k
views
Nested design matrix in edgeR
edger limma paired blocking ruvseq
updated 5.5 years ago by 53k • written 5.5 years ago by • 0
2
votes
4
replies
3.4k
views
limma: comparison of repeat measurements - blocking or within-subject correlation?
limma repeated measurements blocking random effects
updated 5.7 years ago by 53k • written 5.7 years ago by ▴ 10
6
votes
10
replies
4.6k
views
edgeR paired samples with blocking
limma edger blocking paired samples
updated 7.0 years ago by 53k • written 7.0 years ago by ▴ 10
0
votes
1
reply
1.2k
views
Diffbind: How to compare the DBs called with and without a blocking factor
diffbind differential binding analysis blocking
updated 7.8 years ago by ★ 5.2k • written 7.9 years ago by • 0
7 results • Page 1 of 1
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Replies
Comment: Issues with downloading biomaRt - SeqInfo and S4 Vectors by James W. MacDonald 68k
Note that `S4Vectors` contains source code, so you will also need to [install RTools first][1]. [1]: https://cran.r-project.org/bin/win…
Answer: Issues with downloading biomaRt - SeqInfo and S4 Vectors by shepherl 4.2k
Our windows binaries are currently lagging behind as we are currently do not have a windows builder. If you are on windows you can try ins…
Comment: Issues with downloading biomaRt - SeqInfo and S4 Vectors by shepherl 4.2k
Can you please provide your `sessionInfo()` after doing `library("S4Vectors")`
Comment: VariantAnnotation does escape = within header string quotes by Daniel Cameron ▴ 40
I'm just stripping the entire line as a workaround using `meta(header(vcf))$DRAGENCommandLine = NULL`. Not ideal but at least subsequent pa…
Comment: Setting up a DESeq2 Design with Paired Data by Alexander • 0
Hi Kevin, Firstly, thank you so much for not only a very prompt response, but one that is incredibly insightful and helps me learn DESeq2 …
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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