Bioconductor Blocking

Showing : blocking • reset

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1.3k

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voom blocking limma

updated 2.2 years ago by Gordon Smyth 53k • written 2.2 years ago by Gerhard Thallinger ▴ 180

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1.1k

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edgeR blocking

updated 4.6 years ago by Yunshun Chen ▴ 900 • written 4.6 years ago by Molly • 0

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1.4k

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diffbind blocking model

updated 5.1 years ago by Rory Stark ★ 5.2k • written 6.1 years ago by melnuesch ▴ 10

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2.0k

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edger limma paired blocking ruvseq

updated 5.6 years ago by Gordon Smyth 53k • written 5.6 years ago by ScA • 0

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3.4k

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limma repeated measurements blocking random effects

updated 5.8 years ago by Gordon Smyth 53k • written 5.8 years ago by Jane ▴ 10

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4.7k

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limma edger blocking paired samples

updated 7.1 years ago by Gordon Smyth 53k • written 7.1 years ago by anou ▴ 10

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1.2k

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diffbind differential binding analysis blocking

updated 7.9 years ago by Rory Stark ★ 5.2k • written 8.0 years ago by zhangly811 • 0

7 results • Page 1 of 1

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Comment: Bioinformatician at the Lausanne University Hospital by eja.ger.m • 0

For individuals looking to improve communication and collaboration in demanding medical or research environments like the Genetic Medicine …

Answer: NUPOP usage by shepherl 4.2k

You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…

Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0

In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …

Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150

Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?

Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k

BTW, I tested with no issue on MacOS ARM on our previous github issue.

Votes

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

Awards • All

Popular Question to Lluís Revilla Sancho ▴ 760

Popular Question to James W. MacDonald 68k