Bioconductor Bsgenome forge

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bsgenome forge twobits_export bioconductor

6.2 years ago bioinagesh • 0

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bsgenome forge TwoBits_export

updated 8.1 years ago by Hervé Pagès 16k • written 8.1 years ago by stu111538 • 0

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bsgenome bsgenome forge

8.7 years ago • updated 8.3 years ago jodiera • 0

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bsgenome forge

9.3 years ago pj dias ▴ 60

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crisprseek grna searching bsgenome forge offtarget analysis

updated 9.4 years ago by Hervé Pagès 16k • written 9.4 years ago by rajewski23 • 0

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BSgenome forge 2bit bsgnome forge 2bit file

updated 10.6 years ago by Hervé Pagès 16k • written 10.6 years ago by mbk0asis • 0

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bsgenome forge bovine

updated 10.6 years ago by Hervé Pagès 16k • written 10.6 years ago by mbk0asis • 0

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Answer: "Watched Tags" are being erased rather than updated by shepherl 4.2k

This should now be resolved

Answer: Question about collapsing ASVs by genus level during DESeq2 analysis by Michael Love 43k

I'll just note that microbiome stats folks tend to use other tools than DESeq2. > several ASVs belong to the same genus but are not iden…

Comment: Integration: Paired-end vs healthy single-end from a different source by igkryycpinmshzugby • 0

Yes, Option 1 (technical homogenization) reprocessing paired-end samples as single-end using only R1 is the most defensible approach when l…

Answer: Integration: Paired-end vs healthy single-end from a different source by James W. MacDonald 68k

If by reprocess you mean generate libraries and re-sequence, then that's something you could do. Otherwise the biological and technical dif…

Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k

I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112

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Bioconductor 3.22 Released!

Comment: "Watched Tags" are being erased rather than updated

Comment: deseq2 filter the low counts

Answer: DESeq2 interactions

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