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bufferedmatrix
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Reading CEL files in using BufferedMatrix.justRMA
BufferedMatrix
BufferedMatrix
12.2 years ago
Emma Reick
▴ 10
0
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0
replies
883
views
Creating one matrix of intensity data from 4 diffrent CEL files
Normalization
cdf
probe
affy
BufferedMatrix
Normalization
cdf
probe
affy
BufferedMatrix
15.7 years ago
Radhika Ambatipudi
▴ 20
0
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0
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1.1k
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Oligo package and tiling arrays - PM and MM
cdf
affyio
oligo
BufferedMatrix
cdf
affyio
oligo
BufferedMatrix
17.3 years ago
Naira Naouar
▴ 140
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3
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1.7k
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pd.mapping 10Karray
BiocViews
cdf
affyio
biocViews
oligo
pdInfoBuilder
BufferedMatrix
BiocViews
BiocViews
cdf
updated 17.6 years ago by
Seth Falcon
★ 7.4k • written 17.6 years ago by
Marianne Tuefferd
▴ 10
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1
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1.2k
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Problem with snprma
SNP
Biobase
oligo
BufferedMatrix
SNP
Biobase
oligo
BufferedMatrix
updated 17.8 years ago by
Benilton Carvalho
★ 4.3k • written 17.8 years ago by
OLIVIERNUÑEZ
▴ 80
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Comment: DiffBind custom normalization factor
by
Abbie
• 0
Hello! Thanks so much for adding dba.normalize and all the documentation in the manual! I'm hoping I can ask a follow-up question here. I…
Answer: CpGs with genomic positions greater than the chromosome size in EPICv2?
by
James W. MacDonald
68k
All of the annotation packages provided by Bioconductor are simply repackaging of existing data from one or more sources. In this case, the…
Comment: Using TPM from tximport of Salmon output for singscore
by
Kent
• 0
Thank you for the suggestions Michael. Would you say that after filtering out the low count genes, `rlog(counts, blind = T)` is doing the s…
Comment: Using TPM from tximport of Salmon output for singscore
by
Michael Love
43k
For clustering generally we recommend `vst()` see the workflow for example. For working with individual samples, I can see how a scaling/t…
Comment: DESeq2 model - How to test case/control time course model when taking account wi
by
Michael Love
43k
I'd recommend working with a local statistician or someone familiar with linear models in R. I have to reserve my time on the support site …
Votes
clusterProfiler-GO enrichment Error
A: Machine learning in R book
Data preparation and Machine learning on time course RNAseq data
Data preparation and Machine learning on time course RNAseq data
Answer: Use of org.Rn.eg.db with GRCr8 reference genome
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