Bioconductor Catalyst

Showing : catalyst • reset

votes

replies

2.2k

views

CATALYST

updated 12 months ago by Hervé Pagès 16k • written 12 months ago by Hyoann ▴ 20

votes

replies

1.4k

views

CATALYST cytofWorkflow

updated 4.5 years ago by Martin Morgan 25k • written 4.5 years ago by Brent.OCarrigan • 0

vote

replies

1.0k

views

CATALYST SingleCellExperiment

updated 3.4 years ago by helucro ▴ 70 • written 3.4 years ago by achaillon • 0

votes

replies

1.1k

views

CATALYST

22 months ago David • 0

votes

replies

651

views

CATALYST

updated 9 months ago by SamGG ▴ 350 • written 21 months ago by David • 0

votes

replies

237

views

visua Visualization CATALYST

5 months ago elefth.pavlos ▴ 40

votes

replies

412

views

CATALYST

14 months ago Shaun • 0

votes

995

views

CATALYST flowCore assignPrelim Error in vapply read.FCS

5.3 years ago j.krop • 0

8 results • Page 1 of 1

Recent ...

Replies

Comment: Ensembl plants at annotationHub? by Johannes Rainer ★ 2.0k

You can get the `EnsDb` EnsDb.Taestivum.v112.sqlite (for Ensembl 112/ ensemblgenomes 59) [here](https://www.dropbox.com/sh/msic0luivbldmb7/…

Comment: Errors in chromosome annotation-biomaRt by blackwidowzzz • 0

I recommend using a different dataset specific to your rat genome assembly version 8. You can search for available datasets within Ensembl …

Answer: Errors in chromosome annotation-biomaRt by James W. MacDonald 66k

If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …

Comment: Help with ENmix readidat by James W. MacDonald 66k

Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …

Comment: LRT, more than two conditions and pairwise comparisons by James W. MacDonald 66k

In that case, probably easiest to subset to the groups being compared.

Votes

how to control age and gender effect in expression data using DESeq2

Answer: Error retrieving ensembl gene id using biomaRt...

Comment: LRT, more than two conditions and pairwise comparisons

Answer: Control group between 2 batches have different expression in RNAseq data

Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?

Awards • All

Popular Question to mohammedtoufiq91 ▴ 10