Bioconductor Catalyst

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visua Visualization CATALYST

2.2 years ago elefth.pavlos ▴ 40

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CATALYST

updated 2.5 years ago by SamGG ▴ 360 • written 3.5 years ago by David • 0

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CATALYST

updated 2.7 years ago by Hervé Pagès 16k • written 2.7 years ago by Hyoann ▴ 20

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CATALYST

2.9 years ago Shaun • 0

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CATALYST

3.6 years ago David • 0

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CATALYST SingleCellExperiment

updated 5.2 years ago by helucro ▴ 70 • written 5.2 years ago by achaillon • 0

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CATALYST cytofWorkflow

updated 6.2 years ago by Martin Morgan 25k • written 6.2 years ago by Brent.OCarrigan • 0

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CATALYST flowCore assignPrelim Error in vapply read.FCS

7.0 years ago j.krop • 0

8 results • Page 1 of 1

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Answer: Should I use beta1 from limpa::dpc() or limpa::dpcCN(), if they differ? by Gordon Smyth 53k

I tend to use dpcCN(), because it more robust than dpc() to experiments with lots of samples and big differences between samples. You coul…

Answer: Which preprocessing steps are needed before running limpa? by Gordon Smyth 53k

Please see the example limpa analyses given at <http://github.com/smythlab/limpa>, especially the kidney cancer case study. limpa does not…

Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Korneel • 0

Thanks for the quick reply! If I understand correctly, I think if I keep track of the full lineage, I shouldn't have any risk of collapsin…

Comment: Pathway abundance data from Curatedmetagenomics by yesquokkan • 0

Hello, I was also wondering about the same issue. Did you figure it out?

Comment: [DESeq2] Changing dispersion estimates between runs of DESeq2 by colinmccornack • 0

FWIW: This seems to be due to architectural differences between two compute nodes I was running on, specifically with the DESeq2:::fitNbino…

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Answer: Subsetting data verses contrasts [DESeq2]?

A: WGCNA differences two groups 10 replicates each group

A: WGCNA sample size minimum: why?

Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name

Answer: Can you colour dendrogram branch clusters in pheatmap?

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Popular Question to Peter Hickey ▴ 760