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catalyst
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0
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226
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Catalyst::cluster function does NOT produce the same results when setting seed
visua
Visualization
CATALYST
4 months ago
elefth.pavlos
▴ 40
0
votes
2
replies
626
views
Invalid spillover matrix with values greater than 1
CATALYST
updated 9 months ago by
SamGG
▴ 350 • written 20 months ago by
David
• 0
2
votes
3
replies
2.2k
views
Keep getting this error "Warning: unable to access index for repository"?
CATALYST
updated 11 months ago by
Hervé Pagès
16k • written 11 months ago by
Hyoann
▴ 20
0
votes
0
replies
402
views
data truncation with sce2fcs()
CATALYST
14 months ago
Shaun
• 0
2
votes
2
replies
1.1k
views
Unable to download CATALYST
CATALYST
21 months ago
David
• 0
1
vote
3
replies
1.0k
views
singlecellexperiments markers after clustering
CATALYST
SingleCellExperiment
updated 3.4 years ago by
helucro
▴ 70 • written 3.4 years ago by
achaillon
• 0
2
votes
2
replies
1.4k
views
Updating package CATALYST
CATALYST
cytofWorkflow
updated 4.4 years ago by
Martin Morgan
25k • written 4.4 years ago by
Brent.OCarrigan
• 0
0
votes
1
reply
979
views
Error after assignPrelim(), CyTOF compenstation
CATALYST
flowCore
assignPrelim
Error in vapply
read.FCS
5.2 years ago
j.krop
• 0
8 results • Page
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Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
• 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
Answer: More regions in union when increasing DBA$config$mergeOverlap
by
Rory Stark
★ 5.2k
I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
Michael Love
41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Comment: log2FoldChange value is way too different when compared with counts(dds)
by
HAK
• 0
Thank you for the explanation, probably my brain just needed to accumulate enough info to understand what you are saying, but I finally got…
Answer: Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call
by
ATpoint
★ 4.1k
Here the error probably means that you habe genes where expression scross all samples is the same. Rowscaling is value minus mean divided b…
Votes
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
Answer: Fold change calculation in Diffbind vs. DESEQ2?
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
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