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catalyst
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482
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Catalyst::cluster function does NOT produce the same results when setting seed
visua
Visualization
CATALYST
14 months ago
elefth.pavlos
▴ 40
0
votes
2
replies
909
views
Invalid spillover matrix with values greater than 1
CATALYST
updated 18 months ago by
SamGG
▴ 360 • written 2.5 years ago by
David
• 0
2
votes
3
replies
3.2k
views
Keep getting this error "Warning: unable to access index for repository"?
CATALYST
updated 21 months ago by
Hervé Pagès
16k • written 21 months ago by
Hyoann
▴ 20
0
votes
0
replies
646
views
data truncation with sce2fcs()
CATALYST
23 months ago
Shaun
• 0
2
votes
2
replies
1.5k
views
Unable to download CATALYST
CATALYST
2.6 years ago
David
• 0
1
vote
3
replies
1.4k
views
singlecellexperiments markers after clustering
CATALYST
SingleCellExperiment
updated 4.2 years ago by
helucro
▴ 70 • written 4.2 years ago by
achaillon
• 0
2
votes
2
replies
1.7k
views
Updating package CATALYST
CATALYST
cytofWorkflow
updated 5.2 years ago by
Martin Morgan
25k • written 5.2 years ago by
Brent.OCarrigan
• 0
0
votes
1
reply
1.3k
views
Error after assignPrelim(), CyTOF compenstation
CATALYST
flowCore
assignPrelim
Error in vapply
read.FCS
6.0 years ago
j.krop
• 0
8 results • Page
1 of 1
Recent ...
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Comment: Weird p-values using DESeq2?
by
ATpoint
★ 4.7k
This does not look like normalized counts but raw counts. Consider using `counts(dds, normalized = TRUE)` or the output of `ntd()` or `vst/…
Answer: Weird p-values using DESeq2?
by
Wolfgang Huber
★ 13k
Dear Ingrid, thank you for asking. Can you provide the input count matrix (you can "pseudonymize" the biological conditions and the gene n…
Comment: How to visualize these pathways using pathview
by
ingrid.h
• 0
Yes I have seen it, thanks.
Comment: Store Matrix in DataFrame Cell
by
Dario Strbenac
★ 1.6k
It does not appear to work. > DataFrame(name = "test", value = list(matrix(1:4, ncol = 2))) DataFrame with 2 rows and 3 columns …
Comment: Overcoming confounding in batch effect correction
by
Dario Strbenac
★ 1.6k
Actually, it is directly related. ComBat-seq is a part of [sva][1] package. It should use sva tag. [1]: https://bioconductor.org/package…
Votes
A: Fraction count for multi mapping reads; how to generate input file for Deseq2 fo
Comment: Weird p-values using DESeq2?
Comment: Overcoming confounding in batch effect correction
Answer: Store Matrix in DataFrame Cell
Answer: enrichGOgradient color change
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shepherl
4.1k
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Gordon Smyth
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