Bioconductor Cell calling

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single-cell 10X Cell calling DropletUtils cellranger

updated 4.7 years ago by Aaron Lun ★ 28k • written 4.7 years ago by xingxd16 ▴ 20

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DropletUtils scRNA-seq emptyDrops simplesinglecell cell calling

updated 3.1 years ago by Aaron Lun ★ 28k • written 4.3 years ago by C T ▴ 140

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Comment: Problem loading HDF5Array in R 4.3.2 by Mike Smith ★ 6.2k

Great, I'm glad it worked. It's frustrating that the binary doesn't work for you; that shouldn't happen! However I'm not sure how to go a…

Comment: It's possible to use clusterProfiler without an annotationDBI package by Guido Hooiveld ★ 3.8k

No, I don't. Confirm that `geneList` has the expected format. What is the outcome of `geneList[1:5]`, `str(geneList)` and `class(geneList)…

Comment: It's possible to use clusterProfiler without an annotationDBI package by Guido Hooiveld ★ 3.8k

Did you try it yourselves? But the answer is yes.

Comment: It's possible to use clusterProfiler without an annotationDBI package by nromerov • 0

Also do you know if the gaphical functions as dotplot, enrichmap and cnetplot works on this generic analysis? still sorry for bothering you

Comment: It's possible to use clusterProfiler without an annotationDBI package by nromerov • 0

Thank you very much for your help iu was really deseperate about this that i wasn't thinking too well yesterday im really gratefull with yo…

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Comment: Problem loading HDF5Array in R 4.3.2

Answer: gseGO input list

Comment: Problem loading HDF5Array in R 4.3.2

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