Bioconductor Champdata

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ChAMPdata ChAMP

updated 4 days ago by Josh • 0 • written 23 months ago by angel • 0

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293

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ChAMP ChAMPdata

4 months ago elgomez • 0

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2.6k

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EpicV2 ChAMPdata

updated 4 months ago by icecreamlover • 0 • written 5 months ago by nurkenber • 0

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ChAMPdata IlluminaHumanMethylationEPICv2anno.20a1.hg38 ChAMP

updated 11 months ago by James W. MacDonald 68k • written 11 months ago by Mirella Aurora • 0

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526

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ChAMPdata ChAMP

13 months ago Meghana • 0

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loaddata ChAMPdata champload R ChAMP

updated 22 months ago by hfbarrerat • 0 • written 4.1 years ago by Bethan • 0

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ChAMP shiny ChAMPdata

updated 3.0 years ago by anna.stanislawska • 0 • written 3.0 years ago by Mari • 0

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ChAMPdata ChAMP

updated 3.2 years ago by Basti ▴ 780 • written 3.2 years ago by mariat • 0

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ChAMP limma Bioconductor ChAMPdata

updated 5 weeks ago by 81becky • 0 • written 3.6 years ago by Jinyue • 0

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ChAMP ChAMPdata

updated 3.9 years ago by shepherl 4.1k • written 3.9 years ago by Federica ▴ 10

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Illumina methylationArrayAnalysis ChAMPdata ChAMP

4.1 years ago sissialva21 • 0

11 results • Page 1 of 1

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Comment: DiffBind custom normalization factor by Abbie • 0

Hello! Thanks so much for adding dba.normalize and all the documentation in the manual! I'm hoping I can ask a follow-up question here. I…

Answer: CpGs with genomic positions greater than the chromosome size in EPICv2? by James W. MacDonald 68k

All of the annotation packages provided by Bioconductor are simply repackaging of existing data from one or more sources. In this case, the…

Comment: Using TPM from tximport of Salmon output for singscore by Kent • 0

Thank you for the suggestions Michael. Would you say that after filtering out the low count genes, `rlog(counts, blind = T)` is doing the s…

Comment: Using TPM from tximport of Salmon output for singscore by Michael Love 43k

For clustering generally we recommend `vst()` see the workflow for example. For working with individual samples, I can see how a scaling/t…

Comment: DESeq2 model - How to test case/control time course model when taking account wi by Michael Love 43k

I'd recommend working with a local statistician or someone familiar with linear models in R. I have to reserve my time on the support site …

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clusterProfiler-GO enrichment Error

A: Machine learning in R book

Data preparation and Machine learning on time course RNAseq data

Answer: Use of org.Rn.eg.db with GRCr8 reference genome

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Popular Question to Dario Strbenac ★ 1.6k