Showing : champdata • reset
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Errors trying to load EPIC v2 data in ChAMP
ChAMP ChAMPdata
4 days ago elgomez • 0
2
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7
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908
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Annotation for EPICv2
EpicV2 ChAMPdata
updated 10 days ago by • 0 • written 5 weeks ago by • 0
2
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4
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790
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Error EPICv2 ChAMP
ChAMPdata IlluminaHumanMethylationEPICv2anno.20a1.hg38 ChAMP
updated 6 months ago by 67k • written 7 months ago by • 0
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420
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how to solve this error?
ChAMPdata ChAMP
9 months ago Meghana • 0
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1.5k
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Trouble Loading Data into Champ
loaddata ChAMPdata champload R ChAMP
updated 17 months ago by • 0 • written 3.7 years ago by • 0
2
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8
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3.0k
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Problem at champ.load
ChAMPdata ChAMP
updated 7 days ago by • 0 • written 19 months ago by • 0
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1
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1.0k
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Error in ChAMP GUI
ChAMP shiny ChAMPdata
updated 2.7 years ago by • 0 • written 2.7 years ago by • 0
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3
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1.3k
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Wrong terminology used on champ.load() output of ChAMP package?
ChAMPdata ChAMP
updated 2.9 years ago by ▴ 780 • written 2.9 years ago by • 0
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Why the order of sample names in the beta matrix affect the analysis results of Champ.DMP? What should I do?
ChAMP limma Bioconductor ChAMPdata
3.2 years ago Jinyue • 0
2
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1
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1.5k
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How to download the ChAMP dependency ChAMPdata
ChAMP ChAMPdata
updated 3.5 years ago by 4.1k • written 3.5 years ago by ▴ 10
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2
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1.0k
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Error myDMP not found
Illumina methylationArrayAnalysis ChAMPdata ChAMP
3.8 years ago sissialva21 • 0
11 results • Page 1 of 1
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Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by Robert Castelo ★ 3.4k
Hi, this is a long comment thread on 4-year old post, please open a new post with you question. To increase the odds of getting useful answ…
Answer: DESeq2 rerun returns different results by ATpoint ★ 4.5k
DESeq2 is deterministic if you use same input, code and software versions. Make sure to version-control your environment by at least tracki…
Answer: [How to construct a model.matrix ] by Gordon Smyth 51k
> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge by rania.alanany • 0
Hi Robert, Thank you for the explanation, But I am still little bit confused, Is the annotation package (TxDb.Hsapiens.UCSC.hg38.knownGene)…
Comment: Merge Replicates vs Mixed Model by abadgerw • 0
@gabrielhoffman any insight?
Votes
Comment: ColData and ERROR: rows did not converge in beta, labelled in mcols(object)$beta
A: Some questions for remove batch effect by using mnnCorrect
A: Recommendations for combining multiple 10x runs into one SingleCellExperiment
Answer: [How to construct a model.matrix ]
Answer: Handling biological replicates in DESeq2
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Commentator to James W. MacDonald 67k
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