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champdata
•
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2
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10
replies
4.0k
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Problem at champ.load
ChAMPdata
ChAMP
updated 5 weeks ago by
Josh
• 0 • written 2.0 years ago by
angel
• 0
0
votes
0
replies
331
views
Errors trying to load EPIC v2 data in ChAMP
ChAMP
ChAMPdata
5 months ago
elgomez
• 0
2
votes
7
replies
3.1k
views
Annotation for EPICv2
EpicV2
ChAMPdata
updated 5 months ago by
icecreamlover
• 0 • written 6 months ago by
nurkenber
• 0
2
votes
4
replies
1.2k
views
Error EPICv2 ChAMP
ChAMPdata
IlluminaHumanMethylationEPICv2anno.20a1.hg38
ChAMP
updated 12 months ago by
James W. MacDonald
68k • written 12 months ago by
Mirella Aurora
• 0
0
votes
0
replies
563
views
how to solve this error?
ChAMPdata
ChAMP
14 months ago
Meghana
• 0
0
votes
2
replies
1.7k
views
Trouble Loading Data into Champ
loaddata
ChAMPdata
champload
R
ChAMP
updated 23 months ago by
hfbarrerat
• 0 • written 4.2 years ago by
Bethan
• 0
0
votes
1
reply
1.2k
views
Error in ChAMP GUI
ChAMP
shiny
ChAMPdata
updated 3.1 years ago by
anna.stanislawska
• 0 • written 3.1 years ago by
Mari
• 0
0
votes
3
replies
1.4k
views
Wrong terminology used on champ.load() output of ChAMP package?
ChAMPdata
ChAMP
updated 3.3 years ago by
Basti
▴ 780 • written 3.3 years ago by
mariat
• 0
0
votes
3
replies
1.8k
views
Why the order of sample names in the beta matrix affect the analysis results of Champ.DMP? What should I do?
ChAMP
limma
Bioconductor
ChAMPdata
updated 10 weeks ago by
81becky
• 0 • written 3.7 years ago by
Jinyue
• 0
2
votes
1
reply
1.7k
views
How to download the ChAMP dependency ChAMPdata
ChAMP
ChAMPdata
updated 4.0 years ago by
shepherl
4.1k • written 4.0 years ago by
Federica
▴ 10
0
votes
2
replies
1.2k
views
Error myDMP not found
Illumina
methylationArrayAnalysis
ChAMPdata
ChAMP
4.2 years ago
sissialva21
• 0
11 results • Page
1 of 1
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Comment: DiffBind; Error: No sites have activity greater than filter value
by
etiennedanis
• 0
Same issue here as well. This is very weird because I never had this issue before. I started observing this issue with a new ATAC-seq da…
Comment: GSEA preranked analysis downstream of DEseq2
by
Ajay
• 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file
by
janwilseo
• 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Answer: CluserProfiler message "No gene can be mapped"
by
James W. MacDonald
68k
Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…
Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis
by
donnycrimson
• 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
Votes
Answer: DiffBind; Error: No sites have activity greater than filter value
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
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