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CHARM qcReport Question
charm charm
10.7 years ago zeynep özkeserli ▴ 160
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working with genome-wide phastCons scores
BSgenome convert BSgenome rtracklayer IRanges charm BSgenome convert BSgenome rtracklayer
11.1 years ago Robert Castelo ★ 3.4k
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Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
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updated 11.2 years ago by ▴ 50 • written 11.2 years ago by ★ 4.3k
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Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
Annotation PROcess pdInfoBuilder charm Annotation PROcess pdInfoBuilder charm
11.3 years ago Nitesh Turaga ▴ 50
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1.5k
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Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
Annotation PROcess pdInfoBuilder charm Annotation PROcess pdInfoBuilder charm
updated 11.3 years ago by ★ 4.3k • written 11.3 years ago by ▴ 50
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5
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1.9k
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ShortRead 3' trimming negative length vectors are not allowed
charm charm
updated 11.5 years ago by 25k • written 11.5 years ago by ▴ 300
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1.4k
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Charm Error - methp
charm charm
11.6 years ago zeynep özkeserli ▴ 160
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1.9k
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Conversion of minfi format MethylSet to methyAnalysis format MethyGenoSet
Cancer charm minfi methyAnalysis Cancer charm minfi methyAnalysis
11.8 years ago Ed Schwalbe ▴ 20
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CHARM: Affymetrix 1.0R tiling arrays import
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11.8 years ago Guest User ★ 13k
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RCytoscape on Windows
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12.0 years ago Paul Shannon ▴ 750
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[package announcement] bumphunter
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12.0 years ago Kasper Daniel Hansen ★ 6.5k
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13
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CHARM - The following columns in sampleKey...
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updated 12.1 years ago by ▴ 120 • written 12.1 years ago by ★ 13k
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13
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Question about interpretation of CHARM results
charm charm
updated 12.3 years ago by ▴ 120 • written 12.3 years ago by ▴ 160
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1
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835
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Scripts for CHARM data analysis
charm charm
updated 12.3 years ago by ★ 4.2k • written 12.3 years ago by ▴ 10
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1.1k
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How can I identify the closest transcript from a chromosome coordinate?
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12.4 years ago Yoo, Seungyeul ▴ 110
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How can I obtain gene name from chromosome location?
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updated 12.4 years ago by ★ 13k • written 12.4 years ago by ▴ 110
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819
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error in dmrFinder of charm package when there is one sample per group
charm charm
12.4 years ago P. Murakami ▴ 30
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0
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882
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error in dmrFinder of charm package when there is one sample per group
charm charm
12.4 years ago Tarca, Adi ▴ 570
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955
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charm package using MEDIP protocol
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12.5 years ago Tarca, Adi ▴ 570
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0
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1.4k
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Nimblegen promoter medip array platform design file problem
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12.6 years ago zeynep özkeserli ▴ 160
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1.4k
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Nimblegen promoter medip array platform design file problem
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12.6 years ago zeynep özkeserli ▴ 160
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0
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GOHyperGResult in a data.frame, possible NAMESPACE problem?
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14.9 years ago Robert Castelo ★ 3.4k
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1.1k
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biomaRt proxy issues
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15.7 years ago Steve Pederson ▴ 60
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Problems reading multiple MAQ map files with ShortRead ReadAligned
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15.7 years ago David Rossell ▴ 100
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Problems reading multiple MAQ map files with ShortRead ReadAligned
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15.7 years ago Martin Morgan 25k
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Assistant/Associate Professor Department of Biostatistics
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15.7 years ago Kellie J. Archer, Ph.D. ▴ 120
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5.6k
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biomaRt proxy issues
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updated 15.8 years ago by ▴ 600 • written 15.8 years ago by ▴ 60
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1.4k
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Problem with Rgraphviz on OSX with libgvc
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updated 17.9 years ago by ★ 7.4k • written 17.9 years ago by ▴ 80
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Comment: DESeq2 sizefactors counfounded with biological treatment by Anna • 0
Hi James, Apologies (re: posting in the wrong place). Thank you so much for your response, that was exactly the help I needed. Best, A…
Comment: ANOVA like approach of edgeR by Talip ▴ 10
I am comparing the expression patterns of different tissue cell lines (CellType) under five distinct media conditions (Status). Since the c…
Comment: Merge Replicates vs Mixed Model by gabriel.hoffman ▴ 160
It is almost always better to retain the full observed data, if the statistical software is able to model the repeated measures. This is a…
Comment: makeContrastsDream for Interaction by gabriel.hoffman ▴ 160
The simplest way to handle contrasts with an interaction term is to create a new variable. Lets consider a simpler case with variables `Se…
Answer: DESeq2 sizefactors counfounded with biological treatment by James W. MacDonald 67k
Your question is off-topic for this site, which is primarily intended to help people with technical issues with Bioconductor packages rathe…
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Answer: ANOVA like approach of edgeR
Answer: ANOVA like approach of edgeR
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Comment: txdb.mmusculus.ucsc.mm10.knowngene issue on X chromosome
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