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CHARM qcReport Question
charm charm
11.9 years ago zeynep özkeserli ▴ 160
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working with genome-wide phastCons scores
BSgenome convert BSgenome rtracklayer IRanges charm BSgenome convert BSgenome rtracklayer
12.3 years ago Robert Castelo ★ 3.4k
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Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
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updated 12.5 years ago by ▴ 50 • written 12.5 years ago by ★ 4.3k
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Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
Annotation PROcess pdInfoBuilder charm Annotation PROcess pdInfoBuilder charm
12.5 years ago Nitesh Turaga ▴ 50
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Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
Annotation PROcess pdInfoBuilder charm Annotation PROcess pdInfoBuilder charm
updated 12.5 years ago by ★ 4.3k • written 12.5 years ago by ▴ 50
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5
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2.3k
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ShortRead 3' trimming negative length vectors are not allowed
charm charm
updated 12.8 years ago by 25k • written 12.8 years ago by ▴ 300
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1.6k
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Charm Error - methp
charm charm
12.8 years ago zeynep özkeserli ▴ 160
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2.1k
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Conversion of minfi format MethylSet to methyAnalysis format MethyGenoSet
Cancer charm minfi methyAnalysis Cancer charm minfi methyAnalysis
13.0 years ago Ed Schwalbe ▴ 20
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994
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CHARM: Affymetrix 1.0R tiling arrays import
BSgenome affy BSgenome oligo charm BSgenome affy BSgenome oligo charm
13.0 years ago Guest User ★ 13k
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2.2k
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RCytoscape on Windows
Network charm RCytoscape Network charm RCytoscape
13.2 years ago Paul Shannon ▴ 750
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[package announcement] bumphunter
charm minfi bsseq bumphunter charm minfi bsseq bumphunter
13.2 years ago Kasper Daniel Hansen ★ 6.5k
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3.2k
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CHARM - The following columns in sampleKey...
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updated 13.3 years ago by ▴ 120 • written 13.3 years ago by ★ 13k
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13
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3.2k
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Question about interpretation of CHARM results
charm charm
updated 13.5 years ago by ▴ 120 • written 13.5 years ago by ▴ 160
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1
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1.0k
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Scripts for CHARM data analysis
charm charm
updated 13.5 years ago by ★ 4.2k • written 13.5 years ago by ▴ 10
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1.3k
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How can I identify the closest transcript from a chromosome coordinate?
Microarray Genetics probe charm Microarray Genetics probe charm
13.6 years ago Yoo, Seungyeul ▴ 110
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4
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2.3k
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How can I obtain gene name from chromosome location?
Lung charm genomes Lung charm genomes
updated 13.6 years ago by ★ 13k • written 13.6 years ago by ▴ 110
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928
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error in dmrFinder of charm package when there is one sample per group
charm charm
13.7 years ago P. Murakami ▴ 30
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1.0k
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error in dmrFinder of charm package when there is one sample per group
charm charm
13.7 years ago Tarca, Adi ▴ 570
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1.1k
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charm package using MEDIP protocol
charm charm
13.7 years ago Tarca, Adi ▴ 570
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1.6k
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Nimblegen promoter medip array platform design file problem
BiocViews Annotation Organism biocViews pdInfoBuilder charm BiocViews BiocViews Annotation
13.8 years ago zeynep özkeserli ▴ 160
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1.7k
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Nimblegen promoter medip array platform design file problem
BiocViews Annotation Organism biocViews pdInfoBuilder charm BiocViews BiocViews Annotation
13.8 years ago zeynep özkeserli ▴ 160
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0
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825
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GOHyperGResult in a data.frame, possible NAMESPACE problem?
charm charm
16.1 years ago Robert Castelo ★ 3.4k
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1.3k
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biomaRt proxy issues
GO biomaRt charm GO biomaRt charm
16.9 years ago Steve Pederson ▴ 60
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1.2k
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Problems reading multiple MAQ map files with ShortRead ReadAligned
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16.9 years ago David Rossell ▴ 100
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1
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1.2k
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Problems reading multiple MAQ map files with ShortRead ReadAligned
Cancer PROcess ShortRead charm Cancer PROcess ShortRead charm
16.9 years ago Martin Morgan 25k
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Assistant/Associate Professor Department of Biostatistics
Pathways Bayesian Cancer charm Pathways Bayesian Cancer charm
17.0 years ago Kellie J. Archer, Ph.D. ▴ 120
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2
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5.9k
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biomaRt proxy issues
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updated 17.0 years ago by ▴ 600 • written 17.0 years ago by ▴ 60
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Problem with Rgraphviz on OSX with libgvc
graph Rgraphviz charm graph Rgraphviz charm
updated 19.1 years ago by ★ 7.4k • written 19.1 years ago by ▴ 80
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Answer: Which preprocessing steps are needed before running limpa? by Gordon Smyth 53k
Please see the example limpa analyses given at <http://github.com/smythlab/limpa>, especially the kidney cancer case study. limpa does not…
Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Korneel • 0
Thanks for the quick reply! If I understand correctly, I think if I keep track of the full lineage, I shouldn't have any risk of collapsin…
Comment: Pathway abundance data from Curatedmetagenomics by yesquokkan • 0
Hello, I was also wondering about the same issue. Did you figure it out?
Comment: [DESeq2] Changing dispersion estimates between runs of DESeq2 by colinmccornack • 0
FWIW: This seems to be due to architectural differences between two compute nodes I was running on, specifically with the DESeq2:::fitNbino…
Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name by Erik Wright ▴ 160
This has to do with the fact that some taxonomies reuse names at the same rank level. Common examples in the SILVA taxonomy are "Incertae S…
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Answer: Subsetting data verses contrasts [DESeq2]?
A: WGCNA differences two groups 10 replicates each group
A: WGCNA sample size minimum: why?
Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name
Answer: Can you colour dendrogram branch clusters in pheatmap?
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