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charm
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1.2k
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CHARM qcReport Question
charm
charm
11.8 years ago
zeynep özkeserli
▴ 160
0
votes
0
replies
2.0k
views
working with genome-wide phastCons scores
BSgenome
convert
BSgenome
rtracklayer
IRanges
charm
BSgenome
convert
BSgenome
rtracklayer
12.2 years ago
Robert Castelo
★ 3.4k
0
votes
1
reply
1.4k
views
Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
Annotation
PROcess
pdInfoBuilder
charm
Annotation
PROcess
pdInfoBuilder
charm
updated 12.4 years ago by
Nitesh Turaga
▴ 50 • written 12.4 years ago by
Benilton Carvalho
★ 4.3k
0
votes
1
reply
1.5k
views
Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
Annotation
PROcess
pdInfoBuilder
charm
Annotation
PROcess
pdInfoBuilder
charm
12.4 years ago
Nitesh Turaga
▴ 50
0
votes
1
reply
1.7k
views
Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
Annotation
PROcess
pdInfoBuilder
charm
Annotation
PROcess
pdInfoBuilder
charm
updated 12.4 years ago by
Benilton Carvalho
★ 4.3k • written 12.4 years ago by
Nitesh Turaga
▴ 50
0
votes
5
replies
2.3k
views
ShortRead 3' trimming negative length vectors are not allowed
charm
charm
updated 12.7 years ago by
Martin Morgan
25k • written 12.7 years ago by
Sam McInturf
▴ 300
0
votes
0
replies
1.5k
views
Charm Error - methp
charm
charm
12.7 years ago
zeynep özkeserli
▴ 160
0
votes
0
replies
2.0k
views
Conversion of minfi format MethylSet to methyAnalysis format MethyGenoSet
Cancer
charm
minfi
methyAnalysis
Cancer
charm
minfi
methyAnalysis
12.9 years ago
Ed Schwalbe
▴ 20
0
votes
0
replies
987
views
CHARM: Affymetrix 1.0R tiling arrays import
BSgenome
affy
BSgenome
oligo
charm
BSgenome
affy
BSgenome
oligo
charm
12.9 years ago
Guest User
★ 13k
0
votes
0
replies
2.2k
views
RCytoscape on Windows
Network
charm
RCytoscape
Network
charm
RCytoscape
13.1 years ago
Paul Shannon
▴ 750
0
votes
0
replies
1.4k
views
[package announcement] bumphunter
charm
minfi
bsseq
bumphunter
charm
minfi
bsseq
bumphunter
13.1 years ago
Kasper Daniel Hansen
★ 6.5k
0
votes
13
replies
3.2k
views
CHARM - The following columns in sampleKey...
convert
charm
convert
charm
updated 13.2 years ago by
Andrew Jaffe
▴ 120 • written 13.2 years ago by
Guest User
★ 13k
0
votes
13
replies
3.2k
views
Question about interpretation of CHARM results
charm
charm
updated 13.4 years ago by
Andrew Jaffe
▴ 120 • written 13.4 years ago by
zeynep özkeserli
▴ 160
0
votes
1
reply
993
views
Scripts for CHARM data analysis
charm
charm
updated 13.5 years ago by
Tim Triche
★ 4.2k • written 13.5 years ago by
xiaojin li
▴ 10
0
votes
0
replies
1.3k
views
How can I identify the closest transcript from a chromosome coordinate?
Microarray
Genetics
probe
charm
Microarray
Genetics
probe
charm
13.5 years ago
Yoo, Seungyeul
▴ 110
0
votes
4
replies
2.3k
views
How can I obtain gene name from chromosome location?
Lung
charm
genomes
Lung
charm
genomes
updated 13.5 years ago by
Steve Lianoglou
★ 13k • written 13.5 years ago by
Yoo, Seungyeul
▴ 110
0
votes
0
replies
919
views
error in dmrFinder of charm package when there is one sample per group
charm
charm
13.6 years ago
P. Murakami
▴ 30
0
votes
0
replies
1.0k
views
error in dmrFinder of charm package when there is one sample per group
charm
charm
13.6 years ago
Tarca, Adi
▴ 570
0
votes
0
replies
1.1k
views
charm package using MEDIP protocol
charm
charm
13.6 years ago
Tarca, Adi
▴ 570
0
votes
0
replies
1.6k
views
Nimblegen promoter medip array platform design file problem
BiocViews
Annotation
Organism
biocViews
pdInfoBuilder
charm
BiocViews
BiocViews
Annotation
13.7 years ago
zeynep özkeserli
▴ 160
0
votes
0
replies
1.6k
views
Nimblegen promoter medip array platform design file problem
BiocViews
Annotation
Organism
biocViews
pdInfoBuilder
charm
BiocViews
BiocViews
Annotation
13.7 years ago
zeynep özkeserli
▴ 160
0
votes
0
replies
819
views
GOHyperGResult in a data.frame, possible NAMESPACE problem?
charm
charm
16.0 years ago
Robert Castelo
★ 3.4k
0
votes
0
replies
1.3k
views
biomaRt proxy issues
GO
biomaRt
charm
GO
biomaRt
charm
16.8 years ago
Steve Pederson
▴ 60
0
votes
0
replies
1.2k
views
Problems reading multiple MAQ map files with ShortRead ReadAligned
ShortRead
charm
ShortRead
charm
16.8 years ago
David Rossell
▴ 100
0
votes
1
reply
1.2k
views
Problems reading multiple MAQ map files with ShortRead ReadAligned
Cancer
PROcess
ShortRead
charm
Cancer
PROcess
ShortRead
charm
16.8 years ago
Martin Morgan
25k
0
votes
0
replies
1.3k
views
Assistant/Associate Professor Department of Biostatistics
Pathways
Bayesian
Cancer
charm
Pathways
Bayesian
Cancer
charm
16.9 years ago
Kellie J. Archer, Ph.D.
▴ 120
0
votes
2
replies
5.9k
views
biomaRt proxy issues
biomaRt
charm
biomaRt
charm
updated 16.9 years ago by
steffen@stat.Berkeley.EDU
▴ 600 • written 16.9 years ago by
Steve Pederson
▴ 60
0
votes
5
replies
1.8k
views
Problem with Rgraphviz on OSX with libgvc
graph
Rgraphviz
charm
graph
Rgraphviz
charm
updated 19.0 years ago by
Seth Falcon
★ 7.4k • written 19.0 years ago by
Jarrett Byrnes
▴ 80
28 results • Page
1 of 1
Recent ...
Replies
Comment: Question about the filterByExpr function inputs in edgeR
by
mohammedtoufiq91
▴ 10
@gordonsmyth Yes, Gender is more a nuisance factor in our experiment, and our primary interest is to compare groups. I will just use filter…
Comment: Joining different datasets and analyzing using the group-specific condition effe
by
jason.chai
• 0
Thank you very much. I had read that and wondered if I used the recommendation in DESeq vignette, I would lose the pairing between groups? …
Comment: Questions about bacon QC and correction on EWAS results
by
sup0903
• 0
This is qq plot and histogram generated before bacon correction ![enter image description here][1] ![enter image description here][2] …
Comment: Ensembl site unresponsive via biomaRt
by
sebastianenewell
• 0
> I think this is an unrelated issue. The original post includes the > message Error: 'curl_parse_url' is not an exported object from > 'na…
Comment: Development of MSstat workflow to analyze DIA time series data
by
Gordon Smyth
53k
Are there any other explanatory factors or covariates in your experiment other than time point? Do you have biological replicates at each t…
Votes
Answer: Question about the filterByExpr function inputs in edgeR
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
Comment: Clarification on counting in Rsubread (featureCounts)
C: ControlGenes/ housekeeping genes Deseq2
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maltethodberg
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▴ 10
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Lluís Revilla Sancho
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