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CHARM qcReport Question
charm charm
11.8 years ago zeynep özkeserli ▴ 160
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working with genome-wide phastCons scores
BSgenome convert BSgenome rtracklayer IRanges charm BSgenome convert BSgenome rtracklayer
12.3 years ago Robert Castelo ★ 3.4k
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Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
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updated 12.4 years ago by ▴ 50 • written 12.4 years ago by ★ 4.3k
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Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
Annotation PROcess pdInfoBuilder charm Annotation PROcess pdInfoBuilder charm
12.5 years ago Nitesh Turaga ▴ 50
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Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
Annotation PROcess pdInfoBuilder charm Annotation PROcess pdInfoBuilder charm
updated 12.5 years ago by ★ 4.3k • written 12.5 years ago by ▴ 50
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ShortRead 3' trimming negative length vectors are not allowed
charm charm
updated 12.7 years ago by 25k • written 12.7 years ago by ▴ 300
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Charm Error - methp
charm charm
12.7 years ago zeynep özkeserli ▴ 160
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2.1k
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Conversion of minfi format MethylSet to methyAnalysis format MethyGenoSet
Cancer charm minfi methyAnalysis Cancer charm minfi methyAnalysis
13.0 years ago Ed Schwalbe ▴ 20
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CHARM: Affymetrix 1.0R tiling arrays import
BSgenome affy BSgenome oligo charm BSgenome affy BSgenome oligo charm
13.0 years ago Guest User ★ 13k
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RCytoscape on Windows
Network charm RCytoscape Network charm RCytoscape
13.2 years ago Paul Shannon ▴ 750
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[package announcement] bumphunter
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13.2 years ago Kasper Daniel Hansen ★ 6.5k
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CHARM - The following columns in sampleKey...
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updated 13.3 years ago by ▴ 120 • written 13.3 years ago by ★ 13k
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Question about interpretation of CHARM results
charm charm
updated 13.5 years ago by ▴ 120 • written 13.5 years ago by ▴ 160
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Scripts for CHARM data analysis
charm charm
updated 13.5 years ago by ★ 4.2k • written 13.5 years ago by ▴ 10
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How can I identify the closest transcript from a chromosome coordinate?
Microarray Genetics probe charm Microarray Genetics probe charm
13.6 years ago Yoo, Seungyeul ▴ 110
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2.3k
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How can I obtain gene name from chromosome location?
Lung charm genomes Lung charm genomes
updated 13.6 years ago by ★ 13k • written 13.6 years ago by ▴ 110
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error in dmrFinder of charm package when there is one sample per group
charm charm
13.6 years ago P. Murakami ▴ 30
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error in dmrFinder of charm package when there is one sample per group
charm charm
13.6 years ago Tarca, Adi ▴ 570
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charm package using MEDIP protocol
charm charm
13.6 years ago Tarca, Adi ▴ 570
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Nimblegen promoter medip array platform design file problem
BiocViews Annotation Organism biocViews pdInfoBuilder charm BiocViews BiocViews Annotation
13.8 years ago zeynep özkeserli ▴ 160
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1.6k
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Nimblegen promoter medip array platform design file problem
BiocViews Annotation Organism biocViews pdInfoBuilder charm BiocViews BiocViews Annotation
13.8 years ago zeynep özkeserli ▴ 160
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GOHyperGResult in a data.frame, possible NAMESPACE problem?
charm charm
16.1 years ago Robert Castelo ★ 3.4k
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biomaRt proxy issues
GO biomaRt charm GO biomaRt charm
16.9 years ago Steve Pederson ▴ 60
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1.2k
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Problems reading multiple MAQ map files with ShortRead ReadAligned
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16.9 years ago David Rossell ▴ 100
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1
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1.2k
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Problems reading multiple MAQ map files with ShortRead ReadAligned
Cancer PROcess ShortRead charm Cancer PROcess ShortRead charm
16.9 years ago Martin Morgan 25k
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Assistant/Associate Professor Department of Biostatistics
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16.9 years ago Kellie J. Archer, Ph.D. ▴ 120
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5.9k
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biomaRt proxy issues
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updated 17.0 years ago by ▴ 600 • written 17.0 years ago by ▴ 60
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Problem with Rgraphviz on OSX with libgvc
graph Rgraphviz charm graph Rgraphviz charm
updated 19.1 years ago by ★ 7.4k • written 19.1 years ago by ▴ 80
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Comment: using limma trend workflow in CAMERA by Gordon Smyth 53k
No, `trend.var=TRUE` and `trend=TRUE` are not needed in any voom pipeline, because the trend is already incorporated into the voom weights.
Comment: Questions about bacon QC and correction on EWAS results by Tikaaa2sahaaaq2c • 0
In the world of mobile games, the 88ef game download has gained traction for its performance driven design [free download][1], similar to …
Comment: using limma trend workflow in CAMERA by A.Barden ▴ 20
Do you need to set trend.var=TRUE when using camera in the limma-voom pipeline with RNA-Seq data (as apposed to limma-trend pipeline)?
Comment: Upcoming Ensembl API and data access changes - new blog post available by Tikaaa2sahaaaq2c • 0
Just as the Ensembl team transitions to a new platform for streamlined data access, diners can benefit from a digital newks menu prices con…
Comment: Error message that there is no package called Biobase by DamionLedner99 • 0
thanks for sharing!!! https://cran.r-project.org/
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Answer: What happens to genes with low dispersion during dispersion shrinkage in DESeq2
Comment: Are transformed values from rlog /vst log2 normalized counts?
Answer: Are transformed values from rlog /vst log2 normalized counts?
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