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CHARM qcReport Question
charm charm
10.2 years ago zeynep özkeserli ▴ 160
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working with genome-wide phastCons scores
BSgenome convert BSgenome rtracklayer IRanges charm BSgenome convert BSgenome rtracklayer
10.6 years ago Robert Castelo ★ 3.3k
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Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
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updated 10.8 years ago by ▴ 50 • written 10.8 years ago by ★ 4.3k
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Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
Annotation PROcess pdInfoBuilder charm Annotation PROcess pdInfoBuilder charm
10.8 years ago Nitesh Turaga ▴ 50
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Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
Annotation PROcess pdInfoBuilder charm Annotation PROcess pdInfoBuilder charm
updated 10.8 years ago by ★ 4.3k • written 10.8 years ago by ▴ 50
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5
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1.8k
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ShortRead 3' trimming negative length vectors are not allowed
charm charm
updated 11.1 years ago by 25k • written 11.1 years ago by ▴ 300
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1.3k
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Charm Error - methp
charm charm
11.1 years ago zeynep özkeserli ▴ 160
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1.7k
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Conversion of minfi format MethylSet to methyAnalysis format MethyGenoSet
Cancer charm minfi methyAnalysis Cancer charm minfi methyAnalysis
11.3 years ago Ed Schwalbe ▴ 20
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CHARM: Affymetrix 1.0R tiling arrays import
BSgenome affy BSgenome oligo charm BSgenome affy BSgenome oligo charm
11.3 years ago Guest User ★ 13k
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1.8k
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RCytoscape on Windows
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11.5 years ago Paul Shannon ▴ 750
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[package announcement] bumphunter
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11.5 years ago Kasper Daniel Hansen ★ 6.5k
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13
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2.2k
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CHARM - The following columns in sampleKey...
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updated 11.6 years ago by ▴ 120 • written 11.6 years ago by ★ 13k
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13
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2.3k
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Question about interpretation of CHARM results
charm charm
updated 11.8 years ago by ▴ 120 • written 11.8 years ago by ▴ 160
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757
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Scripts for CHARM data analysis
charm charm
updated 11.9 years ago by ★ 4.2k • written 11.9 years ago by ▴ 10
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1.0k
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How can I identify the closest transcript from a chromosome coordinate?
Microarray Genetics probe charm Microarray Genetics probe charm
11.9 years ago Yoo, Seungyeul ▴ 110
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4
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1.6k
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How can I obtain gene name from chromosome location?
Lung charm genomes Lung charm genomes
updated 11.9 years ago by ★ 13k • written 11.9 years ago by ▴ 110
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725
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error in dmrFinder of charm package when there is one sample per group
charm charm
12.0 years ago P. Murakami ▴ 30
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777
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error in dmrFinder of charm package when there is one sample per group
charm charm
12.0 years ago Tarca, Adi ▴ 570
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887
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charm package using MEDIP protocol
charm charm
12.0 years ago Tarca, Adi ▴ 570
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1.3k
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Nimblegen promoter medip array platform design file problem
BiocViews Annotation Organism biocViews pdInfoBuilder charm BiocViews BiocViews Annotation
12.2 years ago zeynep özkeserli ▴ 160
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1.4k
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Nimblegen promoter medip array platform design file problem
BiocViews Annotation Organism biocViews pdInfoBuilder charm BiocViews BiocViews Annotation
12.2 years ago zeynep özkeserli ▴ 160
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644
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GOHyperGResult in a data.frame, possible NAMESPACE problem?
charm charm
14.4 years ago Robert Castelo ★ 3.3k
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1.1k
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biomaRt proxy issues
GO biomaRt charm GO biomaRt charm
15.2 years ago Steve Pederson ▴ 60
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902
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Problems reading multiple MAQ map files with ShortRead ReadAligned
ShortRead charm ShortRead charm
15.3 years ago David Rossell ▴ 100
0
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1
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900
views
Problems reading multiple MAQ map files with ShortRead ReadAligned
Cancer PROcess ShortRead charm Cancer PROcess ShortRead charm
15.3 years ago Martin Morgan 25k
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Assistant/Associate Professor Department of Biostatistics
Pathways Bayesian Cancer charm Pathways Bayesian Cancer charm
15.3 years ago Kellie J. Archer, Ph.D. ▴ 120
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2
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5.5k
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biomaRt proxy issues
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updated 15.4 years ago by ▴ 600 • written 15.4 years ago by ▴ 60
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5
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1.3k
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Problem with Rgraphviz on OSX with libgvc
graph Rgraphviz charm graph Rgraphviz charm
updated 17.4 years ago by ★ 7.4k • written 17.4 years ago by ▴ 80
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Answer: Trouble reading samplesheet in with diffbind to create dba by Anthony • 0
I was struggling with this today too. For me it happened because my peak files were not in the correct format. The "10 elements" refers to …
Comment: gds in GEOmetadb 2023-06-26 version is empty by Frederico Moraes Ferreira ▴ 100
Try axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz
Comment: Most enriched pathway is not expressed when modifying universe parameter by James W. MacDonald 66k
The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …
Answer: In a 3 group DEG analysis with three batches, can I use 1 group in all three bat by Michael Love 42k
You can compare A and C thanks to the sharing of samples from B across 1, 2 and 3.
Comment: Most enriched pathway is not expressed when modifying universe parameter by adripel • 0
In the enrichGO results we have significant and non-significant enriched terms that are displayed. So why would an enriched term (significa…
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Answer: How to do DESeq2 on Kallisto Data
Comment: Most enriched pathway is not expressed when modifying universe parameter
Time-course, comparison of two groups
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
Answer: GESA with certain gene list returns no result with human genom, but many result
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