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CHARM qcReport Question
charm charm
11.5 years ago zeynep özkeserli ▴ 160
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working with genome-wide phastCons scores
BSgenome convert BSgenome rtracklayer IRanges charm BSgenome convert BSgenome rtracklayer
12.0 years ago Robert Castelo ★ 3.4k
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Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
Annotation PROcess pdInfoBuilder charm Annotation PROcess pdInfoBuilder charm
updated 12.1 years ago by ▴ 50 • written 12.1 years ago by ★ 4.3k
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Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
Annotation PROcess pdInfoBuilder charm Annotation PROcess pdInfoBuilder charm
12.1 years ago Nitesh Turaga ▴ 50
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Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
Annotation PROcess pdInfoBuilder charm Annotation PROcess pdInfoBuilder charm
updated 12.1 years ago by ★ 4.3k • written 12.1 years ago by ▴ 50
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5
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2.1k
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ShortRead 3' trimming negative length vectors are not allowed
charm charm
updated 12.4 years ago by 25k • written 12.4 years ago by ▴ 300
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1.5k
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Charm Error - methp
charm charm
12.4 years ago zeynep özkeserli ▴ 160
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2.0k
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Conversion of minfi format MethylSet to methyAnalysis format MethyGenoSet
Cancer charm minfi methyAnalysis Cancer charm minfi methyAnalysis
12.6 years ago Ed Schwalbe ▴ 20
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949
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CHARM: Affymetrix 1.0R tiling arrays import
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12.6 years ago Guest User ★ 13k
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RCytoscape on Windows
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12.8 years ago Paul Shannon ▴ 750
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[package announcement] bumphunter
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12.9 years ago Kasper Daniel Hansen ★ 6.5k
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13
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CHARM - The following columns in sampleKey...
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updated 12.9 years ago by ▴ 120 • written 12.9 years ago by ★ 13k
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13
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3.0k
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Question about interpretation of CHARM results
charm charm
updated 13.1 years ago by ▴ 120 • written 13.2 years ago by ▴ 160
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1
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938
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Scripts for CHARM data analysis
charm charm
updated 13.2 years ago by ★ 4.2k • written 13.2 years ago by ▴ 10
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1.3k
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How can I identify the closest transcript from a chromosome coordinate?
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13.2 years ago Yoo, Seungyeul ▴ 110
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4
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2.2k
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How can I obtain gene name from chromosome location?
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updated 13.3 years ago by ★ 13k • written 13.3 years ago by ▴ 110
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error in dmrFinder of charm package when there is one sample per group
charm charm
13.3 years ago P. Murakami ▴ 30
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971
views
error in dmrFinder of charm package when there is one sample per group
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13.3 years ago Tarca, Adi ▴ 570
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1.0k
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charm package using MEDIP protocol
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13.3 years ago Tarca, Adi ▴ 570
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1.6k
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Nimblegen promoter medip array platform design file problem
BiocViews Annotation Organism biocViews pdInfoBuilder charm BiocViews BiocViews Annotation
13.5 years ago zeynep özkeserli ▴ 160
0
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0
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1.6k
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Nimblegen promoter medip array platform design file problem
BiocViews Annotation Organism biocViews pdInfoBuilder charm BiocViews BiocViews Annotation
13.5 years ago zeynep özkeserli ▴ 160
0
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0
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790
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GOHyperGResult in a data.frame, possible NAMESPACE problem?
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15.7 years ago Robert Castelo ★ 3.4k
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1.3k
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biomaRt proxy issues
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16.5 years ago Steve Pederson ▴ 60
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Problems reading multiple MAQ map files with ShortRead ReadAligned
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16.6 years ago David Rossell ▴ 100
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1
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1.1k
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Problems reading multiple MAQ map files with ShortRead ReadAligned
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16.6 years ago Martin Morgan 25k
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1.3k
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Assistant/Associate Professor Department of Biostatistics
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16.6 years ago Kellie J. Archer, Ph.D. ▴ 120
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2
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5.8k
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biomaRt proxy issues
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updated 16.7 years ago by ▴ 600 • written 16.7 years ago by ▴ 60
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5
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1.7k
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Problem with Rgraphviz on OSX with libgvc
graph Rgraphviz charm graph Rgraphviz charm
updated 18.8 years ago by ★ 7.4k • written 18.8 years ago by ▴ 80
28 results • Page 1 of 1
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Comment: Help with defining groups by Phinney, Brett ▴ 10
I got it working , thank you!!!
Comment: Check removeBatchEffect effectiveness by massimo • 0
I would kindly ask for additional support. When not including the design_timepoint argument in removeBatchEffect and thus keeping the inter…
Comment: Error Loading Experiment from SimBenchData Package by ksankaran • 0
Aha, that was it! The object was class Seurat, but I didn't have it installed. After installing, everything works as expected.
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset? by ATpoint ★ 5.0k
Is a method that is so computationally expensive really beneficial and necessary? You seem to have biological replication, don't you, so ps…
Answer: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by ATpoint ★ 5.0k
Outliers without replacement, independent filtering or all-zero counts for that gene. That's the three options that trigger NAs https://bio…
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Comment: Check removeBatchEffect effectiveness
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
Answer: Error Loading Experiment from SimBenchData Package
Comment: incomplete imputation of missing values with LEA impute() function
Answer: Expected memory usage for analyzing large single-cell seq datasets (> 450,000 ce
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