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CHARM qcReport Question
charm charm
11.7 years ago zeynep özkeserli ▴ 160
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working with genome-wide phastCons scores
BSgenome convert BSgenome rtracklayer IRanges charm BSgenome convert BSgenome rtracklayer
12.2 years ago Robert Castelo ★ 3.4k
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Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
Annotation PROcess pdInfoBuilder charm Annotation PROcess pdInfoBuilder charm
updated 12.3 years ago by ▴ 50 • written 12.3 years ago by ★ 4.3k
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Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
Annotation PROcess pdInfoBuilder charm Annotation PROcess pdInfoBuilder charm
12.3 years ago Nitesh Turaga ▴ 50
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Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
Annotation PROcess pdInfoBuilder charm Annotation PROcess pdInfoBuilder charm
updated 12.3 years ago by ★ 4.3k • written 12.3 years ago by ▴ 50
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5
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2.2k
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ShortRead 3' trimming negative length vectors are not allowed
charm charm
updated 12.6 years ago by 25k • written 12.6 years ago by ▴ 300
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1.5k
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Charm Error - methp
charm charm
12.6 years ago zeynep özkeserli ▴ 160
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2.0k
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Conversion of minfi format MethylSet to methyAnalysis format MethyGenoSet
Cancer charm minfi methyAnalysis Cancer charm minfi methyAnalysis
12.8 years ago Ed Schwalbe ▴ 20
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CHARM: Affymetrix 1.0R tiling arrays import
BSgenome affy BSgenome oligo charm BSgenome affy BSgenome oligo charm
12.9 years ago Guest User ★ 13k
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2.2k
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RCytoscape on Windows
Network charm RCytoscape Network charm RCytoscape
13.1 years ago Paul Shannon ▴ 750
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[package announcement] bumphunter
charm minfi bsseq bumphunter charm minfi bsseq bumphunter
13.1 years ago Kasper Daniel Hansen ★ 6.5k
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13
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3.2k
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CHARM - The following columns in sampleKey...
convert charm convert charm
updated 13.2 years ago by ▴ 120 • written 13.2 years ago by ★ 13k
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13
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3.2k
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Question about interpretation of CHARM results
charm charm
updated 13.4 years ago by ▴ 120 • written 13.4 years ago by ▴ 160
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1
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986
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Scripts for CHARM data analysis
charm charm
updated 13.4 years ago by ★ 4.2k • written 13.4 years ago by ▴ 10
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1.3k
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How can I identify the closest transcript from a chromosome coordinate?
Microarray Genetics probe charm Microarray Genetics probe charm
13.4 years ago Yoo, Seungyeul ▴ 110
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4
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2.3k
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How can I obtain gene name from chromosome location?
Lung charm genomes Lung charm genomes
updated 13.5 years ago by ★ 13k • written 13.5 years ago by ▴ 110
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error in dmrFinder of charm package when there is one sample per group
charm charm
13.5 years ago P. Murakami ▴ 30
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1.0k
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error in dmrFinder of charm package when there is one sample per group
charm charm
13.5 years ago Tarca, Adi ▴ 570
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1.1k
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charm package using MEDIP protocol
charm charm
13.5 years ago Tarca, Adi ▴ 570
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1.6k
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Nimblegen promoter medip array platform design file problem
BiocViews Annotation Organism biocViews pdInfoBuilder charm BiocViews BiocViews Annotation
13.7 years ago zeynep özkeserli ▴ 160
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1.6k
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Nimblegen promoter medip array platform design file problem
BiocViews Annotation Organism biocViews pdInfoBuilder charm BiocViews BiocViews Annotation
13.7 years ago zeynep özkeserli ▴ 160
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0
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810
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GOHyperGResult in a data.frame, possible NAMESPACE problem?
charm charm
16.0 years ago Robert Castelo ★ 3.4k
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1.3k
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biomaRt proxy issues
GO biomaRt charm GO biomaRt charm
16.7 years ago Steve Pederson ▴ 60
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1.1k
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Problems reading multiple MAQ map files with ShortRead ReadAligned
ShortRead charm ShortRead charm
16.8 years ago David Rossell ▴ 100
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1
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1.2k
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Problems reading multiple MAQ map files with ShortRead ReadAligned
Cancer PROcess ShortRead charm Cancer PROcess ShortRead charm
16.8 years ago Martin Morgan 25k
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Assistant/Associate Professor Department of Biostatistics
Pathways Bayesian Cancer charm Pathways Bayesian Cancer charm
16.8 years ago Kellie J. Archer, Ph.D. ▴ 120
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2
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5.9k
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biomaRt proxy issues
biomaRt charm biomaRt charm
updated 16.9 years ago by ▴ 600 • written 16.9 years ago by ▴ 60
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5
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1.7k
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Problem with Rgraphviz on OSX with libgvc
graph Rgraphviz charm graph Rgraphviz charm
updated 19.0 years ago by ★ 7.4k • written 19.0 years ago by ▴ 80
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Comment: nice 3D displays for PCA analysis by adam80haynes • 0
That's a fascinating application of 3D printing in a scientific context. Using this technology to create custom lab equipment, models of mo…
Comment: Bioinformatician at the Lausanne University Hospital by TikTsokaasocissalpc • 0
The Random Word Generator in Italian is a useful tool for generating ideas and exploring new approaches, much like the innovative research …
Comment: DECIPHER DesignProbes unable to design FISH-probes by TikTsokaasocissalpc • 0
If you want to share your research progress and microbiome discoveries with colleagues or friends, [snaptroid android][1] download free mak…
Answer: Limma-voom sample weights and impact on DEG numbers by Gordon Smyth 53k
I recommend that you always use voomLmFit() instead of the earlier voom() or voomWithQualityWeights() functions. Personally, I would use sa…
Answer: wgcna module preseravtion taking too long? by ATpoint ★ 5.0k
WGCNA is not a Bioconductor package, you won't get an answer here. Consider biostars.org or the r/bioinformatics reddit. Note that 10 sampl…
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Limma-voom sample weights and impact on DEG numbers
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
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