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charm
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CHARM qcReport Question
charm
charm
10.2 years ago
zeynep özkeserli
▴ 160
0
votes
0
replies
1.7k
views
working with genome-wide phastCons scores
BSgenome
convert
BSgenome
rtracklayer
IRanges
charm
BSgenome
convert
BSgenome
rtracklayer
10.7 years ago
Robert Castelo
★ 3.3k
0
votes
1
reply
1.1k
views
Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
Annotation
PROcess
pdInfoBuilder
charm
Annotation
PROcess
pdInfoBuilder
charm
updated 10.8 years ago by
Nitesh Turaga
▴ 50 • written 10.8 years ago by
Benilton Carvalho
★ 4.3k
0
votes
1
reply
1.2k
views
Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
Annotation
PROcess
pdInfoBuilder
charm
Annotation
PROcess
pdInfoBuilder
charm
10.8 years ago
Nitesh Turaga
▴ 50
0
votes
1
reply
1.4k
views
Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
Annotation
PROcess
pdInfoBuilder
charm
Annotation
PROcess
pdInfoBuilder
charm
updated 10.8 years ago by
Benilton Carvalho
★ 4.3k • written 10.8 years ago by
Nitesh Turaga
▴ 50
0
votes
5
replies
1.8k
views
ShortRead 3' trimming negative length vectors are not allowed
charm
charm
updated 11.1 years ago by
Martin Morgan
25k • written 11.1 years ago by
Sam McInturf
▴ 300
0
votes
0
replies
1.3k
views
Charm Error - methp
charm
charm
11.1 years ago
zeynep özkeserli
▴ 160
0
votes
0
replies
1.7k
views
Conversion of minfi format MethylSet to methyAnalysis format MethyGenoSet
Cancer
charm
minfi
methyAnalysis
Cancer
charm
minfi
methyAnalysis
11.3 years ago
Ed Schwalbe
▴ 20
0
votes
0
replies
813
views
CHARM: Affymetrix 1.0R tiling arrays import
BSgenome
affy
BSgenome
oligo
charm
BSgenome
affy
BSgenome
oligo
charm
11.4 years ago
Guest User
★ 13k
0
votes
0
replies
1.8k
views
RCytoscape on Windows
Network
charm
RCytoscape
Network
charm
RCytoscape
11.6 years ago
Paul Shannon
▴ 750
0
votes
0
replies
1.1k
views
[package announcement] bumphunter
charm
minfi
bsseq
bumphunter
charm
minfi
bsseq
bumphunter
11.6 years ago
Kasper Daniel Hansen
★ 6.5k
0
votes
13
replies
2.3k
views
CHARM - The following columns in sampleKey...
convert
charm
convert
charm
updated 11.7 years ago by
Andrew Jaffe
▴ 120 • written 11.7 years ago by
Guest User
★ 13k
0
votes
13
replies
2.3k
views
Question about interpretation of CHARM results
charm
charm
updated 11.9 years ago by
Andrew Jaffe
▴ 120 • written 11.9 years ago by
zeynep özkeserli
▴ 160
0
votes
1
reply
759
views
Scripts for CHARM data analysis
charm
charm
updated 11.9 years ago by
Tim Triche
★ 4.2k • written 11.9 years ago by
xiaojin li
▴ 10
0
votes
0
replies
1.0k
views
How can I identify the closest transcript from a chromosome coordinate?
Microarray
Genetics
probe
charm
Microarray
Genetics
probe
charm
11.9 years ago
Yoo, Seungyeul
▴ 110
0
votes
4
replies
1.6k
views
How can I obtain gene name from chromosome location?
Lung
charm
genomes
Lung
charm
genomes
updated 12.0 years ago by
Steve Lianoglou
★ 13k • written 12.0 years ago by
Yoo, Seungyeul
▴ 110
0
votes
0
replies
728
views
error in dmrFinder of charm package when there is one sample per group
charm
charm
12.0 years ago
P. Murakami
▴ 30
0
votes
0
replies
780
views
error in dmrFinder of charm package when there is one sample per group
charm
charm
12.0 years ago
Tarca, Adi
▴ 570
0
votes
0
replies
890
views
charm package using MEDIP protocol
charm
charm
12.0 years ago
Tarca, Adi
▴ 570
0
votes
0
replies
1.3k
views
Nimblegen promoter medip array platform design file problem
BiocViews
Annotation
Organism
biocViews
pdInfoBuilder
charm
BiocViews
BiocViews
Annotation
12.2 years ago
zeynep özkeserli
▴ 160
0
votes
0
replies
1.4k
views
Nimblegen promoter medip array platform design file problem
BiocViews
Annotation
Organism
biocViews
pdInfoBuilder
charm
BiocViews
BiocViews
Annotation
12.2 years ago
zeynep özkeserli
▴ 160
0
votes
0
replies
649
views
GOHyperGResult in a data.frame, possible NAMESPACE problem?
charm
charm
14.5 years ago
Robert Castelo
★ 3.3k
0
votes
0
replies
1.1k
views
biomaRt proxy issues
GO
biomaRt
charm
GO
biomaRt
charm
15.2 years ago
Steve Pederson
▴ 60
0
votes
0
replies
906
views
Problems reading multiple MAQ map files with ShortRead ReadAligned
ShortRead
charm
ShortRead
charm
15.3 years ago
David Rossell
▴ 100
0
votes
1
reply
903
views
Problems reading multiple MAQ map files with ShortRead ReadAligned
Cancer
PROcess
ShortRead
charm
Cancer
PROcess
ShortRead
charm
15.3 years ago
Martin Morgan
25k
0
votes
0
replies
1.1k
views
Assistant/Associate Professor Department of Biostatistics
Pathways
Bayesian
Cancer
charm
Pathways
Bayesian
Cancer
charm
15.3 years ago
Kellie J. Archer, Ph.D.
▴ 120
0
votes
2
replies
5.5k
views
biomaRt proxy issues
biomaRt
charm
biomaRt
charm
updated 15.4 years ago by
steffen@stat.Berkeley.EDU
▴ 600 • written 15.4 years ago by
Steve Pederson
▴ 60
0
votes
5
replies
1.3k
views
Problem with Rgraphviz on OSX with libgvc
graph
Rgraphviz
charm
graph
Rgraphviz
charm
updated 17.5 years ago by
Seth Falcon
★ 7.4k • written 17.5 years ago by
Jarrett Byrnes
▴ 80
28 results • Page
1 of 1
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Replies
Answer: modelGeneVarByPoisson error selecting bandwidth automatically
by
Peter Hickey
▴ 740
Without a reproducible example or access to the data, it's a bit hard to say. I assume the examples work for you (`example("modelGeneVarBy…
Comment: DESeq2 and shrinkage of log2 fold changes
by
Shannon
• 0
Hi Mike, would you mind clarifying where the lfcShrink is enabled "by default"? As you also mentioned above "The difference between results…
Comment: SeSAMe DMR for EPIC V2
by
zhouwanding
▴ 10
My guess is that the input has a suffix-removed probe id for EPICv2 data. We will add a fix to that in the DMR function in a few days. But …
Comment: EnsDb: bad_weak_ptr
by
James W. MacDonald
66k
You cannot save and reuse an `EnsDb` object like that, as it's mostly just a pointer to a SQLite Db and functions to query it. ``` library…
Comment: EnsDb: bad_weak_ptr
by
shepherl
3.9k
It seems to be an issue with the saveRDS and readRDS and not the hubs ``` > aqh EnsDb for Ensembl: |Backend: SQLite |Db type: EnsDb |Type …
Votes
Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
Answer: DESeq2 - vst() - log2FC - no replicates
Answer: Warning message when running limma with covariates
Answer: Warning message when running limma with covariates
Comment: Limma with covariates
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