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CHARM qcReport Question
charm charm
11.6 years ago zeynep özkeserli ▴ 160
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working with genome-wide phastCons scores
BSgenome convert BSgenome rtracklayer IRanges charm BSgenome convert BSgenome rtracklayer
12.0 years ago Robert Castelo ★ 3.4k
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Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
Annotation PROcess pdInfoBuilder charm Annotation PROcess pdInfoBuilder charm
updated 12.2 years ago by ▴ 50 • written 12.2 years ago by ★ 4.3k
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Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
Annotation PROcess pdInfoBuilder charm Annotation PROcess pdInfoBuilder charm
12.2 years ago Nitesh Turaga ▴ 50
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Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
Annotation PROcess pdInfoBuilder charm Annotation PROcess pdInfoBuilder charm
updated 12.2 years ago by ★ 4.3k • written 12.2 years ago by ▴ 50
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5
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2.2k
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ShortRead 3' trimming negative length vectors are not allowed
charm charm
updated 12.5 years ago by 25k • written 12.5 years ago by ▴ 300
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1.5k
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Charm Error - methp
charm charm
12.5 years ago zeynep özkeserli ▴ 160
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2.0k
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Conversion of minfi format MethylSet to methyAnalysis format MethyGenoSet
Cancer charm minfi methyAnalysis Cancer charm minfi methyAnalysis
12.7 years ago Ed Schwalbe ▴ 20
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CHARM: Affymetrix 1.0R tiling arrays import
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12.7 years ago Guest User ★ 13k
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2.1k
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RCytoscape on Windows
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12.9 years ago Paul Shannon ▴ 750
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[package announcement] bumphunter
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12.9 years ago Kasper Daniel Hansen ★ 6.5k
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13
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CHARM - The following columns in sampleKey...
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updated 13.0 years ago by ▴ 120 • written 13.0 years ago by ★ 13k
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13
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3.1k
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Question about interpretation of CHARM results
charm charm
updated 13.2 years ago by ▴ 120 • written 13.2 years ago by ▴ 160
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1
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952
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Scripts for CHARM data analysis
charm charm
updated 13.2 years ago by ★ 4.2k • written 13.2 years ago by ▴ 10
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1.3k
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How can I identify the closest transcript from a chromosome coordinate?
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13.3 years ago Yoo, Seungyeul ▴ 110
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4
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2.2k
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How can I obtain gene name from chromosome location?
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updated 13.3 years ago by ★ 13k • written 13.3 years ago by ▴ 110
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error in dmrFinder of charm package when there is one sample per group
charm charm
13.4 years ago P. Murakami ▴ 30
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0
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981
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error in dmrFinder of charm package when there is one sample per group
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13.4 years ago Tarca, Adi ▴ 570
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1.1k
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charm package using MEDIP protocol
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13.4 years ago Tarca, Adi ▴ 570
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0
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1.6k
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Nimblegen promoter medip array platform design file problem
BiocViews Annotation Organism biocViews pdInfoBuilder charm BiocViews BiocViews Annotation
13.5 years ago zeynep özkeserli ▴ 160
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1.6k
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Nimblegen promoter medip array platform design file problem
BiocViews Annotation Organism biocViews pdInfoBuilder charm BiocViews BiocViews Annotation
13.5 years ago zeynep özkeserli ▴ 160
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0
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797
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GOHyperGResult in a data.frame, possible NAMESPACE problem?
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15.8 years ago Robert Castelo ★ 3.4k
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0
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1.3k
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biomaRt proxy issues
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16.6 years ago Steve Pederson ▴ 60
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Problems reading multiple MAQ map files with ShortRead ReadAligned
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16.6 years ago David Rossell ▴ 100
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1
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Problems reading multiple MAQ map files with ShortRead ReadAligned
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16.6 years ago Martin Morgan 25k
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Assistant/Associate Professor Department of Biostatistics
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16.7 years ago Kellie J. Archer, Ph.D. ▴ 120
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5.8k
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biomaRt proxy issues
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updated 16.7 years ago by ▴ 600 • written 16.7 years ago by ▴ 60
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5
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Problem with Rgraphviz on OSX with libgvc
graph Rgraphviz charm graph Rgraphviz charm
updated 18.8 years ago by ★ 7.4k • written 18.8 years ago by ▴ 80
28 results • Page 1 of 1
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Comment: deseq2 filter the low counts by Michael Love 43k
Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering
Comment: deseq2 filter the low counts by empty_mt • 0
Hi Michael, My matrix consists of 36 samples from 6 treatments (6 samples/ treatment), whether I adjust prefiltering parameters or not, in…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0
That works. I didn't realize what you said about HDF5 files. We always keep those and archive the MTX files. I'm able to read in the file…
Comment: DESeq2 interactions by Michael Love 43k
GPT even v4 gives pretty good answers to DESeq2 questions that are similar to those already posted on the support site. I've also noticed …
Answer: Important: Bioconductor Release 3.22 Delayed by shepherl 4.2k
We will continue with the release on Thursday October 30th. We have shifted one day as originally planned. Thank you
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Answer: DESeq2 interactions
Answer: Important: Bioconductor Release 3.22 Delayed
A: Multi-level experiments in Limma
Answer: Should voomWithQualityWeights still be used when the sample-specific weights var
Answer: DESeq2 for candidate gene analysis
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