Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
charm
•
reset
0
votes
1
reply
1.3k
views
CHARM qcReport Question
charm
charm
11.9 years ago
zeynep özkeserli
▴ 160
0
votes
0
replies
2.0k
views
working with genome-wide phastCons scores
BSgenome
convert
BSgenome
rtracklayer
IRanges
charm
BSgenome
convert
BSgenome
rtracklayer
12.3 years ago
Robert Castelo
★ 3.4k
0
votes
1
reply
1.4k
views
Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
Annotation
PROcess
pdInfoBuilder
charm
Annotation
PROcess
pdInfoBuilder
charm
updated 12.5 years ago by
Nitesh Turaga
▴ 50 • written 12.5 years ago by
Benilton Carvalho
★ 4.3k
0
votes
1
reply
1.5k
views
Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
Annotation
PROcess
pdInfoBuilder
charm
Annotation
PROcess
pdInfoBuilder
charm
12.5 years ago
Nitesh Turaga
▴ 50
0
votes
1
reply
1.7k
views
Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
Annotation
PROcess
pdInfoBuilder
charm
Annotation
PROcess
pdInfoBuilder
charm
updated 12.5 years ago by
Benilton Carvalho
★ 4.3k • written 12.5 years ago by
Nitesh Turaga
▴ 50
0
votes
5
replies
2.3k
views
ShortRead 3' trimming negative length vectors are not allowed
charm
charm
updated 12.8 years ago by
Martin Morgan
25k • written 12.8 years ago by
Sam McInturf
▴ 300
0
votes
0
replies
1.6k
views
Charm Error - methp
charm
charm
12.8 years ago
zeynep özkeserli
▴ 160
0
votes
0
replies
2.1k
views
Conversion of minfi format MethylSet to methyAnalysis format MethyGenoSet
Cancer
charm
minfi
methyAnalysis
Cancer
charm
minfi
methyAnalysis
13.0 years ago
Ed Schwalbe
▴ 20
0
votes
0
replies
994
views
CHARM: Affymetrix 1.0R tiling arrays import
BSgenome
affy
BSgenome
oligo
charm
BSgenome
affy
BSgenome
oligo
charm
13.0 years ago
Guest User
★ 13k
0
votes
0
replies
2.2k
views
RCytoscape on Windows
Network
charm
RCytoscape
Network
charm
RCytoscape
13.2 years ago
Paul Shannon
▴ 750
0
votes
0
replies
1.4k
views
[package announcement] bumphunter
charm
minfi
bsseq
bumphunter
charm
minfi
bsseq
bumphunter
13.2 years ago
Kasper Daniel Hansen
★ 6.5k
0
votes
13
replies
3.2k
views
CHARM - The following columns in sampleKey...
convert
charm
convert
charm
updated 13.3 years ago by
Andrew Jaffe
▴ 120 • written 13.3 years ago by
Guest User
★ 13k
0
votes
13
replies
3.2k
views
Question about interpretation of CHARM results
charm
charm
updated 13.5 years ago by
Andrew Jaffe
▴ 120 • written 13.5 years ago by
zeynep özkeserli
▴ 160
0
votes
1
reply
1.0k
views
Scripts for CHARM data analysis
charm
charm
updated 13.5 years ago by
Tim Triche
★ 4.2k • written 13.5 years ago by
xiaojin li
▴ 10
0
votes
0
replies
1.3k
views
How can I identify the closest transcript from a chromosome coordinate?
Microarray
Genetics
probe
charm
Microarray
Genetics
probe
charm
13.6 years ago
Yoo, Seungyeul
▴ 110
0
votes
4
replies
2.3k
views
How can I obtain gene name from chromosome location?
Lung
charm
genomes
Lung
charm
genomes
updated 13.6 years ago by
Steve Lianoglou
★ 13k • written 13.6 years ago by
Yoo, Seungyeul
▴ 110
0
votes
0
replies
928
views
error in dmrFinder of charm package when there is one sample per group
charm
charm
13.7 years ago
P. Murakami
▴ 30
0
votes
0
replies
1.0k
views
error in dmrFinder of charm package when there is one sample per group
charm
charm
13.7 years ago
Tarca, Adi
▴ 570
0
votes
0
replies
1.1k
views
charm package using MEDIP protocol
charm
charm
13.7 years ago
Tarca, Adi
▴ 570
0
votes
0
replies
1.6k
views
Nimblegen promoter medip array platform design file problem
BiocViews
Annotation
Organism
biocViews
pdInfoBuilder
charm
BiocViews
BiocViews
Annotation
13.8 years ago
zeynep özkeserli
▴ 160
0
votes
0
replies
1.7k
views
Nimblegen promoter medip array platform design file problem
BiocViews
Annotation
Organism
biocViews
pdInfoBuilder
charm
BiocViews
BiocViews
Annotation
13.8 years ago
zeynep özkeserli
▴ 160
0
votes
0
replies
825
views
GOHyperGResult in a data.frame, possible NAMESPACE problem?
charm
charm
16.1 years ago
Robert Castelo
★ 3.4k
0
votes
0
replies
1.3k
views
biomaRt proxy issues
GO
biomaRt
charm
GO
biomaRt
charm
16.9 years ago
Steve Pederson
▴ 60
0
votes
0
replies
1.2k
views
Problems reading multiple MAQ map files with ShortRead ReadAligned
ShortRead
charm
ShortRead
charm
16.9 years ago
David Rossell
▴ 100
0
votes
1
reply
1.2k
views
Problems reading multiple MAQ map files with ShortRead ReadAligned
Cancer
PROcess
ShortRead
charm
Cancer
PROcess
ShortRead
charm
16.9 years ago
Martin Morgan
25k
0
votes
0
replies
1.3k
views
Assistant/Associate Professor Department of Biostatistics
Pathways
Bayesian
Cancer
charm
Pathways
Bayesian
Cancer
charm
17.0 years ago
Kellie J. Archer, Ph.D.
▴ 120
0
votes
2
replies
5.9k
views
biomaRt proxy issues
biomaRt
charm
biomaRt
charm
updated 17.0 years ago by
steffen@stat.Berkeley.EDU
▴ 600 • written 17.0 years ago by
Steve Pederson
▴ 60
0
votes
5
replies
1.8k
views
Problem with Rgraphviz on OSX with libgvc
graph
Rgraphviz
charm
graph
Rgraphviz
charm
updated 19.1 years ago by
Seth Falcon
★ 7.4k • written 19.1 years ago by
Jarrett Byrnes
▴ 80
28 results • Page
1 of 1
Recent ...
Replies
Answer: Which preprocessing steps are needed before running limpa?
by
Gordon Smyth
53k
Please see the example limpa analyses given at <http://github.com/smythlab/limpa>, especially the kidney cancer case study. limpa does not…
Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name
by
Korneel
• 0
Thanks for the quick reply! If I understand correctly, I think if I keep track of the full lineage, I shouldn't have any risk of collapsin…
Comment: Pathway abundance data from Curatedmetagenomics
by
yesquokkan
• 0
Hello, I was also wondering about the same issue. Did you figure it out?
Comment: [DESeq2] Changing dispersion estimates between runs of DESeq2
by
colinmccornack
• 0
FWIW: This seems to be due to architectural differences between two compute nodes I was running on, specifically with the DESeq2:::fitNbino…
Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name
by
Erik Wright
▴ 160
This has to do with the fact that some taxonomies reuse names at the same rank level. Common examples in the SILVA taxonomy are "Incertae S…
Votes
Answer: Subsetting data verses contrasts [DESeq2]?
A: WGCNA differences two groups 10 replicates each group
A: WGCNA sample size minimum: why?
Comment: Why does IDTaxa trainingSet for SILVA contain "_2" suffixes in the taxonomy name
Answer: Can you colour dendrogram branch clusters in pheatmap?
Awards
• All
Popular Question
to
Peter Hickey
▴ 760
Popular Question
to
Sean Davis
21k
Popular Question
to
James W. MacDonald
68k
Popular Question
to
shepherl
4.3k
Popular Question
to
Andreas Zankl
▴ 80
Locations
• All
WEHI, Melbourne, Australia,
6 minutes ago
United States,
1 hour ago
United States,
2 hours ago
United States,
2 hours ago
Slovakia,
2 hours ago
Traffic: 985 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6