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circlize
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2.5k
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Circlize - Error: not enough space for cells at track index '5'.
circlize
2.5 years ago
lessismore
▴ 20
0
votes
1
reply
831
views
package circlize: How to extend circos plot?
circlize
circos
3.8 years ago
Brian Smith
▴ 120
0
votes
1
reply
824
views
R circlize package problem with drawing histogram
circlize
R
Circos
Plots
4.1 years ago
marvel479
• 0
0
votes
1
reply
882
views
Suggestion for circlize package in R for plotting the datasets
Circlize
4.2 years ago
sinha.puja
▴ 10
0
votes
1
reply
1.0k
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display of chromosomes (on the linear scale) and translocations
ggviz
ggplot2
gviz
circlize
Rcircos
5.8 years ago • updated 5.7 years ago
Bogdan
▴ 670
0
votes
2
replies
1.6k
views
Cytoband information for rice
rice
cytoband
circlize
ggbio
ideogram
6.8 years ago
Didi
▴ 10
6 results • Page
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Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Answer: ATACseq merge peaks
by
ATpoint
★ 4.0k
That depends on your analysis. Typically, for differential analysis (and convenience) you would produce a single set of peaks (e.g. by merg…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
camp
▴ 10
Yes, @atpoint is correct. decontX decontaminated counts are not integers due to the way the variation inference algorithm works, but you ca…
Comment: Deseq2. decontXcounts not integers. Useful alternative?
by
ATpoint
★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Votes
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
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