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Showing :
circrna
•
reset
0
votes
0
replies
526
views
visualization of circRNA
circRNA
circRNAprofiler
2.9 years ago
Bogdan
▴ 670
0
votes
0
replies
807
views
circRNAprofiler - miRNA binding sites
circRNA
RNA-seq
circRNAprofiler
3.7 years ago
Terra
• 0
0
votes
7
replies
1.2k
views
DESEQ2 for circRNA normalisation
DESEQ2
circRNA
normalisation
updated 4.5 years ago by
Michael Love
42k • written 4.5 years ago by
zoe.ward
• 0
1
vote
1
reply
863
views
DESeq2 Analysis of RNA-Edited Reads and Circular RNA
deseq2
circRNA
rna-editing
updated 4.6 years ago by
Michael Love
42k • written 4.6 years ago by
maxhenryhills
• 0
0
votes
4
replies
1.1k
views
Is circular RNA read out as linear fragments during Rsubread-DESeq2
deseq2
circrna
rsubread
updated 6.0 years ago by
Wei Shi
★ 3.6k • written 6.0 years ago by
csijst
• 0
2
votes
5
replies
1.8k
views
DESeq2 on CIRI results ?
deseq2
circrna
ciri
ciri2
6.1 years ago
sbcn
▴ 80
6 results • Page
1 of 1
Recent ...
Replies
Comment: gds in GEOmetadb 2023-06-26 version is empty
by
Frederico Moraes Ferreira
▴ 100
Try axel -n 20 https://gbnci.cancer.gov/geo/GEOmetadb.sqlite.gz
Comment: Most enriched pathway is not expressed when modifying universe parameter
by
James W. MacDonald
66k
The default for `enrichGO` is to subset to those with a p-value<0.05. You don't adjust that default argument, so you shouldn't have any GO …
Answer: In a 3 group DEG analysis with three batches, can I use 1 group in all three bat
by
Michael Love
42k
You can compare A and C thanks to the sharing of samples from B across 1, 2 and 3.
Comment: Most enriched pathway is not expressed when modifying universe parameter
by
adripel
• 0
In the enrichGO results we have significant and non-significant enriched terms that are displayed. So why would an enriched term (significa…
Answer: Design formula, numeric contrast, and lfcshrink in deseq2
by
Michael Love
42k
For questions about how to construct the correct contrasts correspond to particular hypotheses, I recommend consulting with a local statist…
Votes
Comment: Most enriched pathway is not expressed when modifying universe parameter
Time-course, comparison of two groups
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
Answer: GESA with certain gene list returns no result with human genom, but many result
Answer: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
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