Bioconductor ClusterProfiler

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275

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clusterProfiler GenomicDistributionsData KEGG

4 days ago • updated 1 day ago fernanda.backsouza ▴ 10

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817

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clusterProfiler RNASeq

updated 2 days ago by Guangchuang Yu ★ 1.2k • written 13 months ago by ruiqi.li ▴ 10

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KEGGgraph org.Cs.eg.db clusterProfiler KEGG AnnotationHubSoftware

updated 2 days ago by James W. MacDonald 65k • written 2 days ago by fernanda.backsouza ▴ 10

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142

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clusterProfiler OrgDb biomaRt Zea_mays

updated 6 days ago by James W. MacDonald 65k • written 7 days ago by sansan • 0

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113

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clusterProfiler GeneSetEnrichment

9 days ago Ana • 0

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137

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DOSE enrichplot clusterProfiler

updated 11 days ago by Guido Hooiveld ★ 3.9k • written 15 days ago by Lucie • 0

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169

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Pathways clusterProfiler gseKEGG KEGG

13 days ago julia_mcdonough • 0

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163

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clusterProfiler ggpubr

updated 17 days ago by James W. MacDonald 65k • written 18 days ago by BCS12 • 0

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134

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clusterProfiler gseKEGG

20 days ago andromeda • 0

9 results • Page 1 of 1

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Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k

I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…

Answer: Improving the design matrices vignette in RNAseq123 by Gordon Smyth 50k

Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! I'll review my code from top to bottom.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.

Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;

Votes

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0