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OrgDb
•
reset
0
votes
0
replies
149
views
Error: package or namespace load failed for 'AnnotationDbi' in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]):
OrgDb
6 weeks ago
hswdl
• 0
1
vote
6
replies
357
views
Adding geneID to list of gene locus IDs
cluster
OrgDb
clusterProfiler
updated 7 weeks ago by
Wolfe
• 0 • written 11 weeks ago by
Chruut
• 0
0
votes
4
replies
229
views
Help with creation of an OrgDB package and conduction of a bioinformatical analysis of gene expression
OrgDb
8 weeks ago
hendrikwenneker
• 0
1
vote
9
replies
399
views
Why is OrgDb linked to specific biocversion? / How to analyze old datasets?
BiocVersion
OrgDb
clusterProfiler
3 months ago
MK
• 0
0
votes
1
reply
229
views
Share Annotation Packages
OrgDb
AnnotationDbi
updated 3 months ago by
shepherl
3.4k • written 4 months ago by
Imad
• 0
0
votes
1
reply
497
views
Exporting org.*.*.db Gene Ontology annotations to excel sheet or txt
OrgDb
RNASeq
updated 12 months ago by
James W. MacDonald
62k • written 12 months ago by
Jonas
• 0
0
votes
7
replies
1.7k
views
how to create an OrgDb package?
orgDb
annotationForge
updated 10 months ago by
pengxinyang12
• 0 • written 15 months ago by
Haibo Liu
• 0
1
vote
2
replies
643
views
Translating Solanum lycopersum gene IDs to ENTREZIDs for GO enrichment analysis using clusterProfiler
OrgDb
Bioconductor
AnnotationHub
clusterProfiler
updated 21 months ago by
Guido Hooiveld
★ 3.5k • written 21 months ago by
ju.ry
• 0
0
votes
0
replies
491
views
Adding to Pseudomonas aeruginosa PAO1 to OrgDb
OrgDb
22 months ago
Thomas.H.Hampton
• 0
2
votes
3
replies
890
views
Gene Ontology Analysis of DE Genes
clusterProfiler
AnnotationDbi
OrgDb
goseq
updated 2.0 years ago by
James W. MacDonald
62k • written 2.0 years ago by
vanbelj
▴ 20
0
votes
2
replies
649
views
Can't select GO from AnnotationHub orgDB packages
GO.db
AnnotationHub
OrgDB
updated 2.6 years ago by
James W. MacDonald
62k • written 2.6 years ago by
Jenny Drnevich
★ 2.0k
3
votes
6
replies
993
views
How to manage AnnotationHub snapshots / most OrgDB are missing?
AnnotationHub
OrgDb
snapshotDate
updated 6 months ago by
shepherl
3.4k • written 2.7 years ago by
Jenny Drnevich
★ 2.0k
0
votes
34
replies
5.5k
views
Error: installation of package org.Mm.eg.db had non-zero exit status
OrgDb
updated 2.8 years ago by
Michaël Degaud
• 0 • written 3.3 years ago by
zhangdengwei
• 0
7
votes
44
replies
2.7k
views
OrgDB download failed via AnnotationHub
annotationhub
orgdb
updated 3.6 years ago by
shepherl
3.4k • written 3.6 years ago by
chirag.parsania
• 0
3
votes
6
replies
1.2k
views
How to create a customized OrgDb in order to perform kegga analysis?
limma
kegga
orgdb
updated 5.0 years ago by
Gordon Smyth
47k • written 5.0 years ago by
baus87
• 0
0
votes
1
reply
931
views
News:
OrgDbs in AnnotationHub
annotationhub
orgdb
News
5.2 years ago
shepherl
3.4k
0
votes
0
replies
877
views
News:
OrgDb and TxDb packages have been added to AnnotationHub for Bioc 3.6
orgdb
txdb
bioconductor
annotation
annotationhub
News
5.3 years ago
shepherl
3.4k
0
votes
6
replies
1.1k
views
Why are important organisms missing from AnnotationHub. Example query(hub, "Zea")
orgdb
annotationhub
5.5 years ago
slbai01
• 0
0
votes
2
replies
1.5k
views
add annotation features to BSgenome or txdb package
bsgenome
txdb
annotation
orgdb
5.6 years ago • updated 5.5 years ago
Didi
▴ 10
1
vote
0
replies
843
views
News:
complete set of OrgDb packages have been added to AnnotationHub
bioconductor
annotationhub
orgdb
News
5.7 years ago
shepherl
3.4k
0
votes
4
replies
984
views
Annotation Hub object no longer present
Orgdb
6.2 years ago
anamabrantesc
• 0
2
votes
12
replies
1.6k
views
ann_objs$MAPCOUNTS <- AnnotationDbi:::createMAPCOUNTS(dbconn, prefix) does not work well
annotation
orgdb
7.0 years ago
knishida
▴ 20
3
votes
13
replies
1.8k
views
Org.db: why a supposed unique key (ID) has multiple entries?
annotationhub
organismdb
orgdb
unsupported organisms
updated 7.0 years ago by
Valerie Obenchain
★ 6.7k • written 7.1 years ago by
Guido Hooiveld
★ 3.5k
0
votes
5
replies
1.3k
views
Why are important organisms missing from AnnotationHub() $rdataclass == "OrgDb"?
annotationhub
orgdb
updated 7.2 years ago by
Valerie Obenchain
★ 6.7k • written 7.2 years ago by
efoss
▴ 10
0
votes
0
replies
977
views
Error in makeOrgPackageFromNCBI
GO
OrgDb
annotate
GOstats
GO
OrgDb
annotate
GOstats
9.7 years ago
Chris Whelan
▴ 60
0
votes
6
replies
1.1k
views
Creating an OrganismDbi package with a few transcript annotations
OrgDb
OrganismDbi
OrgDb
OrganismDbi
updated 9.7 years ago by
Martin Morgan
25k • written 9.7 years ago by
Michael Lawrence
11k
0
votes
1
reply
1.2k
views
problem creating own org.Ss.eg.db
Annotation
GO
Organism
OrgDb
Annotation
GO
Organism
OrgDb
updated 10.9 years ago by
Guido Hooiveld
★ 3.5k • written 11.0 years ago by
Marc Carlson
★ 7.2k
27 results • Page
1 of 1
Recent ...
Replies
Comment: DESeq2 and heatmap for multiple comparisons
by
artem.vorobyev
• 0
this I already did. My question is how to visualize differentially expressed genes on the heatmap for all 3 groups (healty->lesion->treat…
Comment: athPkgBuilder data source :missing probesets
by
nicklesteele532
• 0
> >>> > >>> How to handle the one probeset to multiple locus mappings? I can > >think 3 > >>> possible solutions: > >>> 1. pick the "best" …
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
> sum(width(gr_toexclude)) [1] 2713499861 I excluded everything which was not locus. If small rna locus is from 2000 to 4000 and next locu…
Comment: Why in Bioconductor community people rarely upvote questions?
by
Hervé Pagès
16k
BTW I fail to see how the lack of upvotes to a question would be discouraging as long as you get a good answer. OTOH I can see how failing …
Answer: DESeq2 and heatmap for multiple comparisons
by
swbarnes2
★ 1.2k
If you want to know what genes are different between lesion and treated, compare them to each other.
Votes
Comment: recount 3 protect read length metadata
Answer: Doubts about manipulation and annotation of microarray files deposited at GEO
C: Batch correction in DESeq2
Comment: Strand information in a GAlignmentsList object derived from strand-specific pair
Comment: Strand information in a GAlignmentsList object derived from strand-specific pair
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Malcolm Cook
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