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clustering
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reset
0
votes
0
replies
1.9k
views
'Heat Map for Genes in Dataset' in the '(project name).global.plots.pdf' output of the R-GSEA code
Genetics
Clustering
DECIPHER
Genetics
Clustering
DECIPHER
15.8 years ago
Radek Blatny
▴ 60
0
votes
1
reply
1.4k
views
stuck with affy/ limma
Clustering
affy
limma
Clustering
affy
limma
updated 15.8 years ago by
James W. MacDonald
68k • written 15.8 years ago by
Maxim
▴ 170
0
votes
1
reply
818
views
Clustering
Clustering
Clustering
15.8 years ago
Chintanu
▴ 310
0
votes
0
replies
1.3k
views
stuck with affy/limma
Clustering
affy
limma
Clustering
affy
limma
15.8 years ago
Maxim
▴ 170
0
votes
1
reply
1.2k
views
Kmeans help
Clustering
Clustering
updated 15.8 years ago by
Carlos J. Gil Bellosta
▴ 110 • written 15.8 years ago by
sidahmed BENABDERRAHMANE
▴ 30
0
votes
5
replies
2.0k
views
Best options for cross validation machine learning
Microarray
Clustering
Cancer
Microarray
Clustering
Cancer
updated 15.9 years ago by
Joern Toedling
▴ 450 • written 16.0 years ago by
Daniel Brewer
★ 1.9k
0
votes
0
replies
722
views
R/Bioc workshops at UC Riverside
Clustering
Clustering
16.0 years ago
Thomas Girke
★ 1.7k
0
votes
4
replies
1.9k
views
Positive correlation between dye-swap technical replicates
Normalization
Clustering
probe
limma
GLAD
Normalization
Clustering
probe
limma
GLAD
16.0 years ago
Michał Góralski
▴ 40
0
votes
4
replies
9.5k
views
Agilent 2-color Microarray data analysis tutorial
Microarray
Visualization
Clustering
Microarray
Visualization
Clustering
updated 16.0 years ago by
Martin Morgan
25k • written 16.0 years ago by
Chuming Chen
▴ 140
0
votes
2
replies
1.4k
views
Heatmaps of K-clusters don't Match Expression
Clustering
Clustering
updated 16.0 years ago by
Steve Lianoglou
★ 13k • written 16.0 years ago by
Edwin Groot
▴ 230
0
votes
0
replies
754
views
small bug in overview function of made4
GO
Clustering
GO
Clustering
16.1 years ago
Jenny Drnevich
★ 2.0k
0
votes
3
replies
1.5k
views
Fwd: How to decide which distance metric to use for micoarray data clustering?
Microarray
Clustering
bioDist
Microarray
Clustering
bioDist
updated 16.2 years ago by
Steve Lianoglou
★ 13k • written 16.2 years ago by
Peng Yu
▴ 950
1
vote
3
replies
2.6k
views
microarray analysis in R without replicates
Microarray
Clustering
Microarray
Clustering
updated 16.3 years ago by
Groot, Philip de
▴ 630 • written 16.3 years ago by
Rainer Tischler
▴ 60
0
votes
0
replies
1.6k
views
Questions regarding hclust parameters and output
Clustering
bioDist
Clustering
bioDist
16.3 years ago
Dana Sevak
▴ 10
0
votes
1
reply
974
views
Where classification worked better ?
Clustering
Clustering
updated 16.3 years ago by
Tarca, Adi
▴ 570 • written 16.3 years ago by
santana sarma
▴ 80
0
votes
2
replies
3.1k
views
Batch effect in limma
Clustering
Clustering
updated 16.3 years ago by
James W. MacDonald
68k • written 16.3 years ago by
Yuan Hao
▴ 240
0
votes
1
reply
1.0k
views
Map gene expression to location in genome.
Clustering
Clustering
updated 16.4 years ago by
Hervé Pagès
16k • written 16.4 years ago by
Paul Geeleher
★ 1.3k
0
votes
1
reply
1.5k
views
(no subject)
Pathways
Clustering
goTools
GOstats
Pathways
Clustering
goTools
GOstats
updated 16.5 years ago by
anupam sinha
▴ 270 • written 16.5 years ago by
McGee, Monnie
▴ 300
0
votes
1
reply
1.1k
views
Correlating all pairs of genes in a gene expression matrix?
Clustering
Clustering
updated 16.7 years ago by
Thomas Girke
★ 1.7k • written 16.7 years ago by
Dan Bolser
▴ 40
0
votes
0
replies
1.8k
views
Pearson Correlation & log transformed data.
Clustering
Clustering
16.7 years ago
Paul Geeleher
★ 1.3k
0
votes
1
reply
1.8k
views
Mfuzz package
Clustering
Mfuzz
Clustering
Mfuzz
updated 16.7 years ago by
James W. MacDonald
68k • written 16.8 years ago by
dorothyc
▴ 140
0
votes
1
reply
1.3k
views
Need help with MLearn in MLInterfaces package
Clustering
MLInterfaces
Clustering
MLInterfaces
updated 16.8 years ago by
Vincent J. Carey, Jr.
6.7k • written 16.8 years ago by
Tul Gan
▴ 10
0
votes
1
reply
1.6k
views
Help on: Resizing the plot of a dendrogram when plotting clusters
Clustering
Clustering
16.8 years ago
maon yskmohc
▴ 20
0
votes
4
replies
6.9k
views
Heatmap without using clustering result
Clustering
Mfuzz
Clustering
Mfuzz
updated 16.8 years ago by
Steve Pederson
▴ 60 • written 16.8 years ago by
gregory voisin
▴ 430
0
votes
1
reply
1.7k
views
Group-wise gcrma normalization
Microarray
Normalization
Clustering
zebrafish
probe
gcrma
Microarray
Normalization
probe
updated 16.8 years ago by
Kasper Daniel Hansen
★ 6.5k • written 16.8 years ago by
Jun Yin
▴ 30
0
votes
0
replies
843
views
R/BioC workshops in Southern California
Sequencing
Clustering
Sequencing
Clustering
16.9 years ago
Thomas Girke
★ 1.7k
0
votes
2
replies
1.6k
views
Affinity propagation clustering in R
Clustering
Clustering
updated 17.0 years ago by
Laurent Gautier
★ 2.3k • written 17.0 years ago by
Peder Worning
▴ 100
0
votes
0
replies
1.2k
views
2009 Courses***R/S-PLUS Advanced & Fundamentals - January 2009. Also check out our New&Emerging Courses.
Clustering
Survival
Clustering
Survival
17.0 years ago
sue@xlsolutions-corp.com
▴ 570
0
votes
0
replies
1.1k
views
Visualising SOM output as U-matrix in R\Bioconductor
Clustering
Clustering
17.0 years ago
Paul Geeleher
★ 1.3k
0
votes
1
reply
759
views
converting MA to a text file
GO
Clustering
GO
Clustering
updated 17.2 years ago by
Sean Davis
21k • written 17.2 years ago by
r.kandimalla
▴ 40
0
votes
1
reply
1.3k
views
Extreme weighting values using arrayWeights
Clustering
affy
limma
Clustering
affy
limma
updated 17.2 years ago by
Matt Ritchie
▴ 50 • written 17.2 years ago by
james perkins
▴ 300
0
votes
1
reply
1.2k
views
Microarray pattern standardization and fold change cut-offs
Clustering
Clustering
updated 17.3 years ago by
Sean Davis
21k • written 17.3 years ago by
Johan van Heerden
▴ 40
0
votes
1
reply
2.4k
views
what is the best baseline transformation method before clustering
GO
Clustering
probe
affy
gcrma
GeneSpring
GO
Clustering
probe
affy
gcrma
GeneSpring
updated 17.3 years ago by
Sean Davis
21k • written 17.3 years ago by
Ruppert Valentino
▴ 270
0
votes
4
replies
3.3k
views
How to get and save normalized data from limma
Clustering
limma
Clustering
limma
17.3 years ago
Wang, Jixin
▴ 130
0
votes
1
reply
1.0k
views
Limma: What to choose?
Clustering
limma
Clustering
limma
updated 17.3 years ago by
James W. MacDonald
68k • written 17.3 years ago by
Ingrid H. G. Østensen
▴ 700
0
votes
0
replies
1.2k
views
HOPACH and .cdt which doesn't work with javatreeview
Clustering
hopach
Clustering
hopach
17.3 years ago
Sébastien Tourlet
▴ 20
0
votes
2
replies
1.4k
views
Hierarchical clustering of RMA data
Normalization
Clustering
Normalization
Clustering
updated 17.3 years ago by
Deanne Taylor
▴ 50 • written 17.3 years ago by
Ryan Kirkbride
▴ 10
0
votes
0
replies
823
views
Extracting Intensities from LIMMA with Reference Design
Microarray
Clustering
Microarray
Clustering
17.4 years ago
Lin Huffman
▴ 20
0
votes
2
replies
1.7k
views
Adding a text label to the classvec colour bar in heatplot
Clustering
Cancer
graph
GLAD
Clustering
Cancer
graph
GLAD
updated 17.4 years ago by
Amy Mikhail
▴ 460 • written 17.4 years ago by
Kasper Daniel Hansen
★ 6.5k
0
votes
4
replies
2.0k
views
Adding a text label to the classvec colour bar in heatplot
Clustering
Cancer
graph
Clustering
Cancer
graph
updated 17.4 years ago by
Amy Mikhail
▴ 460 • written 17.4 years ago by
Aedin Culhane
▴ 510
0
votes
1
reply
1.4k
views
HOPACH clustering of genes
Clustering
hopach
Clustering
hopach
updated 17.4 years ago by
Shannon, William
▴ 20 • written 17.4 years ago by
Nathan Harmston
▴ 100
2
votes
4
replies
3.7k
views
Your thoughts on Limma Array Weights?
Clustering
limma
Clustering
limma
updated 17.5 years ago by
Gordon Smyth
53k • written 17.5 years ago by
Paul Leo
▴ 970
0
votes
0
replies
1.1k
views
R/BioC workshops in Southern California
Cheminformatics
Clustering
Cheminformatics
Clustering
17.5 years ago
Thomas Girke
★ 1.7k
0
votes
2
replies
2.2k
views
row clustering in heatmap.2
GO
Clustering
GO
Clustering
updated 17.5 years ago by
Mark Cowley
▴ 400 • written 17.5 years ago by
Johnstone, Alice
▴ 410
0
votes
4
replies
1.5k
views
lumiHumanAll.db, GOstats
Clustering
GOstats
Clustering
GOstats
updated 17.6 years ago by
Wei Shi
★ 3.6k • written 17.6 years ago by
Al Ivens
▴ 270
0
votes
1
reply
1.1k
views
lumiHumanAll.db, Gostats
Annotation
Clustering
probe
convert
Annotation
Clustering
probe
convert
updated 17.6 years ago by
Al Ivens
▴ 270 • written 17.6 years ago by
Pan Du
★ 1.2k
0
votes
0
replies
1.0k
views
Why makeoutput() function is not included in hopach 1.4.3 version
Microarray
Clustering
hopach
Microarray
Clustering
hopach
17.6 years ago
Suprabhath Reddy
▴ 10
0
votes
1
reply
1.7k
views
BioC 2.2 now available
SNP
Microarray
Genetics
Annotation
Preprocessing
Bayesian
Clustering
Infrastructure
Cancer
updated 17.7 years ago by
Patrick Aboyoun
★ 1.6k • written 17.7 years ago by
Martin Morgan
25k
0
votes
1
reply
1.6k
views
calculating median expression between to identical gene names in data frame
Clustering
Cancer
affy
Clustering
Cancer
affy
updated 17.8 years ago by
Adaikalavan Ramasamy
★ 1.8k • written 17.8 years ago by
Srinivas Iyyer
▴ 600
0
votes
1
reply
1.2k
views
ExpressionSet class and problems with phenotype and metadata matrices
Annotation
Clustering
hgu95av2
Annotation
Clustering
hgu95av2
updated 17.8 years ago by
James W. MacDonald
68k • written 17.8 years ago by
Sean MacEachern
▴ 60
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Limma-voom sample weights and impact on DEG numbers
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