Bioconductor Clusterprofiler

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104

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KEGGgraph org.Cs.eg.db clusterProfiler KEGG AnnotationHubSoftware

updated 9 days ago by James W. MacDonald 65k • written 9 days ago by fernanda.backsouza ▴ 10

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373

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clusterProfiler GenomicDistributionsData KEGG

11 days ago • updated 8 days ago fernanda.backsouza ▴ 10

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180

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clusterProfiler OrgDb biomaRt Zea_mays

updated 13 days ago by James W. MacDonald 65k • written 14 days ago by sansan • 0

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132

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clusterProfiler GeneSetEnrichment

16 days ago Ana • 0

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188

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Pathways clusterProfiler gseKEGG KEGG

20 days ago julia_mcdonough • 0

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157

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DOSE enrichplot clusterProfiler

updated 18 days ago by Guido Hooiveld ★ 3.9k • written 22 days ago by Lucie • 0

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178

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clusterProfiler ggpubr

updated 24 days ago by James W. MacDonald 65k • written 25 days ago by BCS12 • 0

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142

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clusterProfiler gseKEGG

27 days ago andromeda • 0

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852

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clusterProfiler RNASeq

updated 9 days ago by Guangchuang Yu ★ 1.2k • written 14 months ago by ruiqi.li ▴ 10

9 results • Page 1 of 1

Recent ...

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Comment: Timecourse RNASeq analysis by Aurora • 0

I managed to run ImpulseDE2 as I am interested in getting significant gene changes over time. Now I would like to run deseq as well and com…

Comment: Once again a "Model matrix not full rank" by arfranco ▴ 130

But.. How to run a temporal assay?

Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0

Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …

Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k

Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…

Answer: Gene-by-sample covariates in limma by Gordon Smyth 50k

Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…

Votes

Bioconductor 3.19 is Released!

A: Error in DESeqDataSet : some values in assay are not integers

Bioconductor 3.19 is Released!

Answer: DEseq2 coefficient

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