Bioconductor Cmap

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microarray cmap package gCMAP gCAMPWeb

updated 4.0 years ago by Martin Morgan 25k • written 4.0 years ago by bastien.chassagnol • 0

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limma cmap microarrays differential gene expression

6.9 years ago • updated 6.8 years ago kevin.m.hao ▴ 10

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Comment: Unlog transformed data in DESeq2 by Gordon Smyth 48k

The RUVIII people themselves use limma ( https://doi.org/10.1093/nar/gkz433 ). But please, post your question as a question. That would be …

Comment: DESeq2 - groups with biological replicates from the same patient by Oscar • 0

Yes I see that. So, to expand, if strong grouping IS seen, then the ```~condition``` approach is not appropriate, as will likely lead to po…

Comment: DESeq2 - groups with biological replicates from the same patient by Oscar • 0

This seems a very odd response to what seemed to be a very reasonable question

Comment: DESeq2 - groups with biological replicates from the same patient by Oscar • 0

I'm not using Chat GPT. I've been discussing at length this issue of having multiple samples derived from the same patients with many colle…

Comment: DESeq2 - groups with biological replicates from the same patient by Kevin Blighe 3.9k

No, it's more important to solve broader issues. >10 million children go hungry every day in the USA. Controlling for Type 1 error will not…

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