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microarrays
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4
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5
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2.1k
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sample size determination in microarrays studies with limma analysis
limma
sample size
microarrays
statistical power
6.1 years ago
eleonoregravier
▴ 70
0
votes
6
replies
2.7k
views
not able to install geoquery package
microarrays
xml
RCurl
libxml2
libcurl
updated 7.1 years ago by
Martin Morgan
25k • written 7.1 years ago by
farahqureshi5
• 0
0
votes
0
replies
813
views
microarray data expression set
whole human genome microarray 4x44k
microarrays
7.2 years ago
farahqureshi5
• 0
5
votes
6
replies
1.4k
views
Confusing: identify differentially expression genes (DEG) perturbed by a drug in Limma
limma
cmap
microarrays
differential gene expression
7.3 years ago
kevin.m.hao
▴ 10
7
votes
4
replies
3.2k
views
Limma contrast for variables disease, gender and age
limma design matrix
limma
limma contrast matrix
microarrays
7.8 years ago
miyuki_iii
▴ 10
5 results • Page
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Answer: Dominance Index for Shotgun Metagenomics Data
by
Leo Lahti
▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano
by
pl23
• 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions
by
Michael Love
41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
by
ussarizona
▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative?
by
Michael Love
41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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