Bioconductor Cnvtools

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cn.mops cnv cnvtools

updated 8.8 years ago by Martin Morgan 25k • written 8.8 years ago by bioconductor • 0

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copynumber cnvtools cnv copywriteR

updated 7.8 years ago by t.kuilman ▴ 170 • written 7.8 years ago by ahinsahr11 • 0

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CNVtools CNVtools

updated 14.3 years ago by Sean Davis 21k • written 14.3 years ago by Bryan Hepworth ▴ 30

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cn.mops cnv cnvtools

updated 8.8 years ago by Günter Klambauer ▴ 540 • written 8.8 years ago by voksdvoks • 0

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cn.mops cnvtools tcga cnv

updated 8.5 years ago by Günter Klambauer ▴ 540 • written 8.5 years ago by vakul.mohanty ▴ 20

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genomicranges cnvtools

6.6 years ago julrodr80 ▴ 30

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cnv cnvtools crlmm

7.8 years ago enriquev • 0

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CNVtools CNVtools

14.5 years ago Vincent Plagnol ▴ 10

8 results • Page 1 of 1

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Answer: normalization using Deseq2 by ATpoint ★ 4.1k

counts(dds, normalized=TRUE)

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

Hi Michael, I have tried what you suggested. I started with methylation loci. I created segment1 and segment2 but how to combine them bec…

Comment: EGSEA usage with microarray data (with vooma)? by Chris • 0

Hi Pekka, I also try EGSEA with microarray data. However, I got this error. Would you please have a suggestion? gsa = egsea.ma(numeric…

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 42k

> Any suggestions for methylation data segmentation? I think the same segmentation can be used.

Comment: deseq2 results by swbarnes2 ★ 1.3k

Cross-posted https://www.biostars.org/p/9594331/#9594458

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A: Volcanoplot with limma - RAW P-values or Adj.P-Values

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Answer: minfi latest update for EPIC V2 chip

A: Error in DESeqDataSet : some values in assay are not integers

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